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This page was generated on 2024-05-31 19:30:47 -0400 (Fri, 31 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" 4669
palomino4Windows Server 2022 Datacenterx644.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" 4404
merida1macOS 12.7.4 Montereyx86_644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4431
kjohnson1macOS 13.6.6 Venturaarm644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4384
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2070/2233HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TargetSearch 2.7.0  (landing page)
Alvaro Cuadros-Inostroza
Snapshot Date: 2024-05-30 18:57:37 -0400 (Thu, 30 May 2024)
git_url: https://git.bioconductor.org/packages/TargetSearch
git_branch: devel
git_last_commit: 2252393
git_last_commit_date: 2024-04-30 10:19:56 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.4 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for TargetSearch on palomino4


To the developers/maintainers of the TargetSearch package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TargetSearch.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: TargetSearch
Version: 2.7.0
Command: chmod a+r TargetSearch -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data TargetSearch
StartedAt: 2024-05-31 03:29:19 -0400 (Fri, 31 May 2024)
EndedAt: 2024-05-31 03:30:12 -0400 (Fri, 31 May 2024)
EllapsedTime: 53.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r TargetSearch -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data TargetSearch
###
##############################################################################
##############################################################################


* checking for file 'TargetSearch/DESCRIPTION' ... OK
* preparing 'TargetSearch':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'RICorrection.Rnw' using knitr
texify: major issue: User/administrator updates are out-of-sync.
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "RICorrection.tex" --max-iterations=20 -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/tex/latex" -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'RICorrection.Rnw' failed with diagnostics:
running 'texi2dvi' on 'RICorrection.tex' failed

LaTeX errors:
ignettes/RICorrection.tex:111: Package xcolor Error: Undefined color `fgcolor'.


See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/RICorrection.tex:124: Package xcolor Error: Undefined color `fgcolor'.


See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/RICorrection.tex:144: Package xcolor Error: Undefined color `fgcolor'.


See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/RICorrection.tex:157: Package xcolor Error: Undefined color `fgcolor'.


See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/RICorrection.tex:189: Package xcolor Error: Undefined color `fgcolor'.


See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/RICorrection.tex:228: Package xcolor Error: Undefined color `fgcolor'.


See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/RICorrection.tex:249: Package xcolor Error: Undefined color `fgcolor'.


See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/RICorrection.tex:264: Package xcolor Error: Undefined color `fgcolor'.


See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/RICorrection.tex:293: Package xcolor Error: Undefined color `fgcolor'.


See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/RICorrection.tex:303: Package xcolor Error: Undefined color `fgcolor'.


See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.

--- failed re-building 'RICorrection.Rnw'

--- re-building 'TargetSearch.Rnw' using knitr
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
texify: major issue: User/administrator updates are out-of-sync.
Error: processing vignette 'TargetSearch.Rnw' failed with diagnostics:
running 'texi2dvi' on 'TargetSearch.tex' failed

LaTeX errors:
ignettes/TargetSearch.tex:139: Package xcolor Error: Undefined color `fgcolor'.


See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/TargetSearch.tex:158: Package xcolor Error: Undefined color `fgcolor'.


See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/TargetSearch.tex:185: Package xcolor Error: Undefined color `fgcolor'.


See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/TargetSearch.tex:232: Package xcolor Error: Undefined color `fgcolor'.


See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/TargetSearch.tex:262: Package xcolor Error: Undefined color `fgcolor'.


See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/TargetSearch.tex:302: Package xcolor Error: Undefined color `fgcolor'.


See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/TargetSearch.tex:334: Package xcolor Error: Undefined color `fgcolor'.


See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/TargetSearch.tex:365: Package xcolor Error: Undefined color `fgcolor'.


See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/TargetSearch.tex:387: Package xcolor Error: Undefined color `fgcolor'.


See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/TargetSearch.tex:462: Package xcolor Error: Undefined color `fgcolor'.


See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/TargetSearch.tex:488: Package xcolor Error: Undefined color `fgcolor'.


See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/TargetSearch.tex:501: Package xcolor Error: Undefined color `fgcolor'.


See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/TargetSearch.tex:518: Package xcolor Error: Undefined color `fgcolor'.


See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/TargetSearch.tex:533: Package xcolor Error: Undefined color `fgcolor'.


See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/TargetSearch.tex:548: Package xcolor Error: Undefined color `fgcolor'.


See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/TargetSearch.tex:601: Package xcolor Error: Undefined color `fgcolor'.


See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/TargetSearch.tex:661: Package xcolor Error: Undefined color `fgcolor'.


See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/TargetSearch.tex:687: Package xcolor Error: Undefined color `fgcolor'.


See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/TargetSearch.tex:707: Package xcolor Error: Undefined color `fgcolor'.


See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/TargetSearch.tex:743: Package xcolor Error: Undefined color `fgcolor'.


See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/TargetSearch.tex:758: Package xcolor Error: Undefined color `fgcolor'.


See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/TargetSearch.tex:770: Package xcolor Error: Undefined color `fgcolor'.


See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/TargetSearch.tex:787: Package xcolor Error: Undefined color `fgcolor'.


See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.

--- failed re-building 'TargetSearch.Rnw'

SUMMARY: processing the following files failed:
  'RICorrection.Rnw' 'TargetSearch.Rnw'

Error: Vignette re-building failed.
In addition: Warning message:
In system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "TargetSearch.tex" --max-iterations=20 -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/tex/latex" -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/bibtex/bst"' had status 1
Execution halted