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This page was generated on 2024-07-24 11:39 -0400 (Wed, 24 Jul 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4688
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4284
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4455
kjohnson3macOS 13.6.5 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4404
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1986/2248HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SpatialFeatureExperiment 1.7.1  (landing page)
Lambda Moses
Snapshot Date: 2024-07-23 14:00 -0400 (Tue, 23 Jul 2024)
git_url: https://git.bioconductor.org/packages/SpatialFeatureExperiment
git_branch: devel
git_last_commit: 10488cb
git_last_commit_date: 2024-07-22 03:10:26 -0400 (Mon, 22 Jul 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino8Windows Server 2022 Datacenter / x64  OK    OK    ERROR    OK  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    ERROR    OK  
kjohnson3macOS 13.6.5 Ventura / arm64  OK    OK    ERROR    OK  

BUILD results for SpatialFeatureExperiment on nebbiolo2

To the developers/maintainers of the SpatialFeatureExperiment package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SpatialFeatureExperiment.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: SpatialFeatureExperiment
Version: 1.7.1
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 SpatialFeatureExperiment
StartedAt: 2024-07-23 19:52:14 -0400 (Tue, 23 Jul 2024)
EndedAt: 2024-07-23 19:53:55 -0400 (Tue, 23 Jul 2024)
EllapsedTime: 101.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 SpatialFeatureExperiment
###
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* checking for file ‘SpatialFeatureExperiment/DESCRIPTION’ ... OK
* preparing ‘SpatialFeatureExperiment’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘SFE.Rmd’ using rmarkdown
/usr/bin/tar: This does not look like a tar archive
/usr/bin/tar: Skipping to next header
/usr/bin/tar: Exiting with failure status due to previous errors

Quitting from lines 406-409 [unnamed-chunk-57] (SFE.Rmd)
Error: processing vignette 'SFE.Rmd' failed with diagnostics:
path[1]="/tmp/Rtmp0Ehdrl/xenium/xenium2": No such file or directory
--- failed re-building ‘SFE.Rmd’

SUMMARY: processing the following file failed:
  ‘SFE.Rmd’

Error: Vignette re-building failed.
Execution halted