Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-06-19 12:10 -0400 (Wed, 19 Jun 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4687 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 RC (2024-06-06 r86719) -- "Race for Your Life" | 4402 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 RC (2024-06-06 r86719) -- "Race for Your Life" | 4351 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1980/2242 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
SpatialFeatureExperiment 1.7.0 (landing page) Lambda Moses
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | ERROR | OK | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | ERROR | OK | |||||||||
To the developers/maintainers of the SpatialFeatureExperiment package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SpatialFeatureExperiment.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: SpatialFeatureExperiment |
Version: 1.7.0 |
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 SpatialFeatureExperiment |
StartedAt: 2024-06-18 19:54:19 -0400 (Tue, 18 Jun 2024) |
EndedAt: 2024-06-18 19:56:00 -0400 (Tue, 18 Jun 2024) |
EllapsedTime: 101.2 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 SpatialFeatureExperiment ### ############################################################################## ############################################################################## * checking for file ‘SpatialFeatureExperiment/DESCRIPTION’ ... OK * preparing ‘SpatialFeatureExperiment’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘SFE.Rmd’ using rmarkdown /usr/bin/tar: This does not look like a tar archive /usr/bin/tar: Skipping to next header /usr/bin/tar: Exiting with failure status due to previous errors Quitting from lines 406-409 [unnamed-chunk-57] (SFE.Rmd) Error: processing vignette 'SFE.Rmd' failed with diagnostics: path[1]="/tmp/RtmpeNuI1r/xenium/xenium2": No such file or directory --- failed re-building ‘SFE.Rmd’ SUMMARY: processing the following file failed: ‘SFE.Rmd’ Error: Vignette re-building failed. Execution halted