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This page was generated on 2024-05-30 12:37:24 -0400 (Thu, 30 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" 4669
palomino4Windows Server 2022 Datacenterx644.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" 4404
merida1macOS 12.7.4 Montereyx86_644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4431
kjohnson1macOS 13.6.6 Venturaarm644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4384
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1930/2233HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SingleCellExperiment 1.27.2  (landing page)
Davide Risso
Snapshot Date: 2024-05-29 11:04:14 -0400 (Wed, 29 May 2024)
git_url: https://git.bioconductor.org/packages/SingleCellExperiment
git_branch: devel
git_last_commit: 7c68b56
git_last_commit_date: 2024-05-22 02:02:41 -0400 (Wed, 22 May 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  YES
merida1macOS 12.7.4 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.6 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for SingleCellExperiment on merida1


To the developers/maintainers of the SingleCellExperiment package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SingleCellExperiment.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: SingleCellExperiment
Version: 1.27.2
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SingleCellExperiment
StartedAt: 2024-05-29 19:33:28 -0400 (Wed, 29 May 2024)
EndedAt: 2024-05-29 19:36:00 -0400 (Wed, 29 May 2024)
EllapsedTime: 152.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SingleCellExperiment
###
##############################################################################
##############################################################################


* checking for file ‘SingleCellExperiment/DESCRIPTION’ ... OK
* preparing ‘SingleCellExperiment’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘apply.Rmd’ using rmarkdown
--- finished re-building ‘apply.Rmd’

--- re-building ‘devel.Rmd’ using rmarkdown
--- finished re-building ‘devel.Rmd’

--- re-building ‘intro.Rmd’ using rmarkdown

Quitting from lines 86-89 [fluidigm] (intro.Rmd)
Error: processing vignette 'intro.Rmd' failed with diagnostics:
failed to open file at '~/Library/Caches/gypsum/bucket/scRNAseq/legacy/2023-12-18/allen/other_data/list_contents.json.gz'
--- failed re-building ‘intro.Rmd’

SUMMARY: processing the following file failed:
  ‘intro.Rmd’

Error: Vignette re-building failed.
Execution halted