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This page was generated on 2024-07-16 11:41 -0400 (Tue, 16 Jul 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4677
palomino6Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4416
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4444
kjohnson3macOS 13.6.5 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4393
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4373
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1963/2243HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SNPRelate 1.39.0  (landing page)
Xiuwen Zheng
Snapshot Date: 2024-07-15 14:00 -0400 (Mon, 15 Jul 2024)
git_url: https://git.bioconductor.org/packages/SNPRelate
git_branch: devel
git_last_commit: 9da19ab
git_last_commit_date: 2024-04-30 10:38:38 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino6Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.6.5 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  


INSTALL results for SNPRelate on palomino6

To the developers/maintainers of the SNPRelate package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SNPRelate.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: SNPRelate
Version: 1.39.0
Command: C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL SNPRelate
StartedAt: 2024-07-15 15:18:58 -0400 (Mon, 15 Jul 2024)
EndedAt: 2024-07-15 15:20:08 -0400 (Mon, 15 Jul 2024)
EllapsedTime: 69.6 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL SNPRelate
###
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* installing to library 'C:/Users/biocbuild/bbs-3.20-bioc/R/library'
* installing *source* package 'SNPRelate' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
using C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
g++ -std=gnu++17  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/gdsfmt/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ConvToGDS.cpp -o ConvToGDS.o
gcc  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/gdsfmt/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c R_SNPRelate.c -o R_SNPRelate.o
g++ -std=gnu++17  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/gdsfmt/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c SNPRelate.cpp -o SNPRelate.o
g++ -std=gnu++17  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/gdsfmt/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ThreadPool.cpp -o ThreadPool.o
g++ -std=gnu++17  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/gdsfmt/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c dGenGWAS.cpp -o dGenGWAS.o
g++ -std=gnu++17  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/gdsfmt/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c dVect.cpp -o dVect.o
g++ -std=gnu++17  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/gdsfmt/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c genBeta.cpp -o genBeta.o
g++ -std=gnu++17  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/gdsfmt/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c genEIGMIX.cpp -o genEIGMIX.o
g++ -std=gnu++17  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/gdsfmt/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c genFst.cpp -o genFst.o
g++ -std=gnu++17  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/gdsfmt/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c genHWE.cpp -o genHWE.o
g++ -std=gnu++17  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/gdsfmt/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c genIBD.cpp -o genIBD.o
g++ -std=gnu++17  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/gdsfmt/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c genIBS.cpp -o genIBS.o
g++ -std=gnu++17  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/gdsfmt/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c genKING.cpp -o genKING.o
g++ -std=gnu++17  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/gdsfmt/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c genLD.cpp -o genLD.o
g++ -std=gnu++17  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/gdsfmt/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c genPCA.cpp -o genPCA.o
g++ -std=gnu++17  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/gdsfmt/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c genSlideWin.cpp -o genSlideWin.o
g++ -std=gnu++17 -shared -s -static-libgcc -o SNPRelate.dll tmp.def ConvToGDS.o R_SNPRelate.o SNPRelate.o ThreadPool.o dGenGWAS.o dVect.o genBeta.o genEIGMIX.o genFst.o genHWE.o genIBD.o genIBS.o genKING.o genLD.o genPCA.o genSlideWin.o -LC:/Users/biocbuild/bbs-3.20-bioc/R/bin/x64 -lRlapack -LC:/Users/biocbuild/bbs-3.20-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LC:/Users/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.20-bioc/R/library/00LOCK-SNPRelate/00new/SNPRelate/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SNPRelate)