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This page was generated on 2024-05-31 19:30:33 -0400 (Fri, 31 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" 4669
palomino4Windows Server 2022 Datacenterx644.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" 4404
merida1macOS 12.7.4 Montereyx86_644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4431
kjohnson1macOS 13.6.6 Venturaarm644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4384
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1682/2233HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Repitools 1.51.0  (landing page)
Mark Robinson
Snapshot Date: 2024-05-30 18:57:37 -0400 (Thu, 30 May 2024)
git_url: https://git.bioconductor.org/packages/Repitools
git_branch: devel
git_last_commit: 62a6cd3
git_last_commit_date: 2024-04-30 10:24:48 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 12.7.4 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

INSTALL results for Repitools on palomino4


To the developers/maintainers of the Repitools package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Repitools.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: Repitools
Version: 1.51.0
Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL Repitools
StartedAt: 2024-05-30 21:53:58 -0400 (Thu, 30 May 2024)
EndedAt: 2024-05-30 21:55:02 -0400 (Thu, 30 May 2024)
EllapsedTime: 64.1 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL Repitools
###
##############################################################################
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* installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library'
* installing *source* package 'Repitools' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
using C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
gcc  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -D R_NO_REMAP -I.    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c const.c -o const.o
gcc  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -D R_NO_REMAP -I.    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c hyp2f1.c -o hyp2f1.o
In file included from hyp2f1.c:81:
./mconf.h:100: warning: "DOMAIN" redefined
  100 | #define DOMAIN          1       /* argument domain error */
      | 
In file included from F:/biocbuild/bbs-3.20-bioc/R/include/Rmath.h:43,
                 from hyp2f1.c:80:
C:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:29: note: this is the location of the previous definition
   29 | #define DOMAIN          _DOMAIN
      | 
./mconf.h:101: warning: "SING" redefined
  101 | #define SING            2       /* argument singularity */
      | 
C:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:30: note: this is the location of the previous definition
   30 | #define SING            _SING
      | 
./mconf.h:102: warning: "OVERFLOW" redefined
  102 | #define OVERFLOW        3       /* overflow range error */
      | 
C:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:31: note: this is the location of the previous definition
   31 | #define OVERFLOW        _OVERFLOW
      | 
./mconf.h:103: warning: "UNDERFLOW" redefined
  103 | #define UNDERFLOW       4       /* underflow range error */
      | 
C:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:32: note: this is the location of the previous definition
   32 | #define UNDERFLOW       _UNDERFLOW
      | 
./mconf.h:104: warning: "TLOSS" redefined
  104 | #define TLOSS           5       /* total loss of precision */
      | 
C:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:33: note: this is the location of the previous definition
   33 | #define TLOSS           _TLOSS
      | 
./mconf.h:105: warning: "PLOSS" redefined
  105 | #define PLOSS           6       /* partial loss of precision */
      | 
C:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:34: note: this is the location of the previous definition
   34 | #define PLOSS           _PLOSS
      | 
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c mmeansd.cpp -o mmeansd.o
mmeansd.cpp: In function 'SEXPREC* moving_mean_sd(SEXP, SEXP, SEXP)':
mmeansd.cpp:33:24: warning: variable 'is' set but not used [-Wunused-but-set-variable]
   33 |     int * x, nval, hs, is, i;
      |                        ^~
gcc  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -D R_NO_REMAP -I.    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c mtherr.c -o mtherr.o
In file included from mtherr.c:58:
./mconf.h:100: warning: "DOMAIN" redefined
  100 | #define DOMAIN          1       /* argument domain error */
      | 
In file included from F:/biocbuild/bbs-3.20-bioc/R/include/R.h:45,
                 from mtherr.c:56:
C:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:29: note: this is the location of the previous definition
   29 | #define DOMAIN          _DOMAIN
      | 
./mconf.h:101: warning: "SING" redefined
  101 | #define SING            2       /* argument singularity */
      | 
C:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:30: note: this is the location of the previous definition
   30 | #define SING            _SING
      | 
./mconf.h:102: warning: "OVERFLOW" redefined
  102 | #define OVERFLOW        3       /* overflow range error */
      | 
C:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:31: note: this is the location of the previous definition
   31 | #define OVERFLOW        _OVERFLOW
      | 
./mconf.h:103: warning: "UNDERFLOW" redefined
  103 | #define UNDERFLOW       4       /* underflow range error */
      | 
C:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:32: note: this is the location of the previous definition
   32 | #define UNDERFLOW       _UNDERFLOW
      | 
./mconf.h:104: warning: "TLOSS" redefined
  104 | #define TLOSS           5       /* total loss of precision */
      | 
C:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:33: note: this is the location of the previous definition
   33 | #define TLOSS           _TLOSS
      | 
./mconf.h:105: warning: "PLOSS" redefined
  105 | #define PLOSS           6       /* partial loss of precision */
      | 
C:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:34: note: this is the location of the previous definition
   34 | #define PLOSS           _PLOSS
      | 
gcc  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -D R_NO_REMAP -I.    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ringo_stuff.c -o ringo_stuff.o
ringo_stuff.c:13:24: warning: 'Ringo_calls' defined but not used [-Wunused-variable]
   13 | static R_CallMethodDef Ringo_calls[] = {
      |                        ^~~~~~~~~~~
g++ -std=gnu++17 -shared -s -static-libgcc -o Repitools.dll tmp.def const.o hyp2f1.o mmeansd.o mtherr.o ringo_stuff.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.20-bioc/R/library/00LOCK-Repitools/00new/Repitools/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Repitools)