Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-06-28 11:40 -0400 (Fri, 28 Jun 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4693 |
palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4089 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 RC (2024-06-06 r86719) -- "Race for Your Life" | 4407 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 RC (2024-06-06 r86719) -- "Race for Your Life" | 4356 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1732/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
RMassBank 3.15.1 (landing page) RMassBank at Eawag
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
palomino6 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | see weekly results here | ||||||||||||
To the developers/maintainers of the RMassBank package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RMassBank.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: RMassBank |
Version: 3.15.1 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RMassBank |
StartedAt: 2024-06-27 17:52:06 -0400 (Thu, 27 Jun 2024) |
EndedAt: 2024-06-27 18:00:14 -0400 (Thu, 27 Jun 2024) |
EllapsedTime: 488.2 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RMassBank ### ############################################################################## ############################################################################## * checking for file ‘RMassBank/DESCRIPTION’ ... OK * preparing ‘RMassBank’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘RMassBank.Rmd’ using rmarkdown INFO [2024-06-27 17:53:19] Loaded compoundlist successfully INFO [2024-06-27 17:53:19] msmsWorkflow: Step 1. Acquire all MSMS spectra from files | | | 0% | |================================ | 50% | |================================================================| 100%INFO [2024-06-27 17:53:25] msmsWorkflow: Step 2. First analysis pre recalibration | | | 0% | |================================ | 50% | |================================================================| 100% INFO [2024-06-27 17:53:47] msmsWorkflow: Step 3. Aggregate all spectra INFO [2024-06-27 17:53:47] msmsWorkflow: Step 4. Recalibrate m/z values in raw spectra 2024-06-27 17:53:48.262 R[22155:199115798] XType: com.apple.fonts is not accessible. 2024-06-27 17:53:48.262 R[22155:199115798] XType: XTFontStaticRegistry is enabled. INFO [2024-06-27 17:53:48] msmsWorkflow: Done. INFO [2024-06-27 17:55:02] msmsWorkflow: Step 4. Recalibrate m/z values in raw spectra INFO [2024-06-27 17:55:07] msmsWorkflow: Done. INFO [2024-06-27 17:55:08] msmsWorkflow: Step 4. Recalibrate m/z values in raw spectra INFO [2024-06-27 17:55:08] msmsWorkflow: Done. INFO [2024-06-27 17:55:09] msmsWorkflow: Step 5. Reanalyze recalibrated spectra | | | 0% | |================================ | 50% | |================================================================| 100% INFO [2024-06-27 17:55:30] msmsWorkflow: Step 6. Aggregate recalibrated results INFO [2024-06-27 17:55:30] msmsWorkflow: Step 7. Reanalyze fail peaks for N2 + O | | | 0% | |================================ | 50% | |================================================================| 100% INFO [2024-06-27 17:57:21] msmsWorkflow: Step 8. Peak multiplicity filtering INFO [2024-06-27 17:57:22] msmsWorkflow: Done. INFO [2024-06-27 17:57:23] mbWorkflow: Step 1. Gather info from several databases Quitting from lines 433-434 [unnamed-chunk-22] (RMassBank.Rmd) Error: processing vignette 'RMassBank.Rmd' failed with diagnostics: non-character argument --- failed re-building ‘RMassBank.Rmd’ --- re-building ‘RMassBankNonstandard.Rmd’ using rmarkdown INFO [2024-06-27 17:59:08] msmsWorkflow: Step 4. Recalibrate m/z values in raw spectra INFO [2024-06-27 17:59:15] msmsWorkflow: Done. INFO [2024-06-27 17:59:18] Loaded compoundlist successfully INFO [2024-06-27 17:59:18] msmsWorkflow: Step 1. Acquire all MSMS spectra from files | | | 0% | |================================ | 50% | |================================================================| 100%INFO [2024-06-27 17:59:25] msmsWorkflow: Done. INFO [2024-06-27 17:59:25] msmsWorkflow: Step 2. First analysis pre recalibration | | | 0% | |================================ | 50% | |================================================================| 100% INFO [2024-06-27 17:59:27] msmsWorkflow: Step 3. Aggregate all spectra INFO [2024-06-27 17:59:27] msmsWorkflow: Step 4. Recalibrate m/z values in raw spectra INFO [2024-06-27 17:59:28] msmsWorkflow: Step 5. Reanalyze recalibrated spectra | | | 0% | |================================ | 50% | |================================================================| 100% INFO [2024-06-27 17:59:30] msmsWorkflow: Step 6. Aggregate recalibrated results INFO [2024-06-27 17:59:30] msmsWorkflow: Step 7. Reanalyze fail peaks for N2 + O | | | 0% | |================================ | 50% | |================================================================| 100% INFO [2024-06-27 17:59:45] msmsWorkflow: Done. INFO [2024-06-27 17:59:46] msmsWorkflow: Step 1. Acquire all MSMS spectra from files | | | 0% | |================================ | 50% | |================================================================| 100%INFO [2024-06-27 17:59:54] msmsWorkflow: Done. INFO [2024-06-27 17:59:54] msmsWorkflow: Step 2. First analysis pre recalibration | | | 0% | |================================ | 50% | |================================================================| 100% INFO [2024-06-27 17:59:56] msmsWorkflow: Step 3. Aggregate all spectra INFO [2024-06-27 17:59:56] msmsWorkflow: Step 4. Recalibrate m/z values in raw spectra INFO [2024-06-27 17:59:56] msmsWorkflow: Step 5. Reanalyze recalibrated spectra | | | 0% | |================================ | 50% | |================================================================| 100% INFO [2024-06-27 17:59:59] msmsWorkflow: Step 6. Aggregate recalibrated results INFO [2024-06-27 17:59:59] msmsWorkflow: Step 7. Reanalyze fail peaks for N2 + O | | | 0% | |================================ | 50% | |================================================================| 100% INFO [2024-06-27 18:00:11] msmsWorkflow: Done. INFO [2024-06-27 18:00:12] msmsWorkflow: Step 8. Peak multiplicity filtering INFO [2024-06-27 18:00:12] msmsWorkflow: Done. --- finished re-building ‘RMassBankNonstandard.Rmd’ SUMMARY: processing the following file failed: ‘RMassBank.Rmd’ Error: Vignette re-building failed. Execution halted