Back to Multiple platform build/check report for BioC 3.20:   simplified   long
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

This page was generated on 2024-05-30 12:36:00 -0400 (Thu, 30 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" 4669
palomino4Windows Server 2022 Datacenterx644.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" 4404
merida1macOS 12.7.4 Montereyx86_644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4431
kjohnson1macOS 13.6.6 Venturaarm644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4384
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1340/2233HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MultiRNAflow 1.3.0  (landing page)
Rodolphe Loubaton
Snapshot Date: 2024-05-29 11:04:14 -0400 (Wed, 29 May 2024)
git_url: https://git.bioconductor.org/packages/MultiRNAflow
git_branch: devel
git_last_commit: 850819a
git_last_commit_date: 2024-04-30 11:51:10 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.4 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for MultiRNAflow on palomino4


To the developers/maintainers of the MultiRNAflow package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MultiRNAflow.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: MultiRNAflow
Version: 1.3.0
Command: chmod a+r MultiRNAflow -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data MultiRNAflow
StartedAt: 2024-05-29 17:11:00 -0400 (Wed, 29 May 2024)
EndedAt: 2024-05-29 17:17:00 -0400 (Wed, 29 May 2024)
EllapsedTime: 360.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r MultiRNAflow -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data MultiRNAflow
###
##############################################################################
##############################################################################


* checking for file 'MultiRNAflow/DESCRIPTION' ... OK
* preparing 'MultiRNAflow':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'Running_analysis_with_MultiRNAflow.Rmd' using rmarkdown
--- finished re-building 'Running_analysis_with_MultiRNAflow.Rmd'

--- re-building 'MultiRNAflow_vignette-knitr.Rnw' using knitr
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
texify: major issue: User/administrator updates are out-of-sync.
Error: processing vignette 'MultiRNAflow_vignette-knitr.Rnw' failed with diagnostics:
running 'texi2dvi' on 'MultiRNAflow_vignette-knitr.tex' failed

LaTeX errors:
gnettes/MultiRNAflow_vignette-knitr.tex:849: Package xcolor Error: Undefined co
lor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:862: Package xcolor Error: Undefined co
lor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:879: Package xcolor Error: Undefined co
lor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:891: Package xcolor Error: Undefined co
lor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:905: Package xcolor Error: Undefined co
lor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:916: Package xcolor Error: Undefined co
lor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:933: Package xcolor Error: Undefined co
lor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:1007: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:1017: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:1027: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:1037: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:1067: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:1112: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:1234: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:1264: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:1323: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:1352: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:1399: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:1416: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:1439: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:1509: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:1541: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:1613: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:1629: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:1646: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:1659: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:1729: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:1765: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:1833: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:1849: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:1865: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:1939: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:1977: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:2055: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:2073: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:2132: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:2159: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:2229: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:2244: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:2335: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:2403: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:2416: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
gnettes/MultiRNAflow_vignette-knitr.tex:2522: Package xcolor Error: Undefined c
olor `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediat
--- failed re-building 'MultiRNAflow_vignette-knitr.Rnw'

SUMMARY: processing the following file failed:
  'MultiRNAflow_vignette-knitr.Rnw'

Error: Vignette re-building failed.
In addition: Warning message:
In system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "MultiRNAflow_vignette-knitr.tex" --max-iterations=20 -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/tex/latex" -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/bibtex/bst"' had status 1
Execution halted