Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-06-28 11:39 -0400 (Fri, 28 Jun 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4693 |
palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4089 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 RC (2024-06-06 r86719) -- "Race for Your Life" | 4407 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 RC (2024-06-06 r86719) -- "Race for Your Life" | 4356 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 963/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HPiP 1.11.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino6 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | see weekly results here | ||||||||||||
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HPiP |
Version: 1.11.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.11.0.tar.gz |
StartedAt: 2024-06-27 20:51:18 -0400 (Thu, 27 Jun 2024) |
EndedAt: 2024-06-27 20:56:13 -0400 (Thu, 27 Jun 2024) |
EllapsedTime: 295.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HPiP.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.11.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/HPiP.Rcheck’ * using R version 4.4.1 RC (2024-06-06 r86719) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘HPiP/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HPiP’ version ‘1.11.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HPiP’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE License stub is invalid DCF. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) getHPI.Rd:29: Lost braces 29 | then the Kronecker product is the code{(pm × qn)} block matrix | ^ * checking Rd metadata ... OK * checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘ftrCOOL’ * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed var_imp 35.841 1.747 37.881 FSmethod 34.250 1.622 36.137 corr_plot 34.048 1.635 35.913 pred_ensembel 14.289 0.562 10.762 enrichfindP 0.491 0.063 8.991 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/Users/biocbuild/bbs-3.20-bioc/meat/HPiP.Rcheck/00check.log’ for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.4.1 RC (2024-06-06 r86719) -- "Race for Your Life" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin20 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage('HPiP') No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE avNNet Loading required package: ggplot2 Loading required package: lattice Fitting Repeat 1 # weights: 103 initial value 98.253828 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 95.515798 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 99.318304 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 96.878601 final value 94.008696 converged Fitting Repeat 5 # weights: 103 initial value 98.184600 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 104.543733 iter 10 value 93.535112 iter 10 value 93.535112 iter 10 value 93.535112 final value 93.535112 converged Fitting Repeat 2 # weights: 305 initial value 102.237949 iter 10 value 89.949827 iter 20 value 82.566988 iter 30 value 81.149997 iter 40 value 79.662072 iter 50 value 79.479503 final value 79.478665 converged Fitting Repeat 3 # weights: 305 initial value 106.323180 final value 94.052910 converged Fitting Repeat 4 # weights: 305 initial value 100.798794 final value 94.052910 converged Fitting Repeat 5 # weights: 305 initial value 95.082543 final value 94.052910 converged Fitting Repeat 1 # weights: 507 initial value 127.454482 final value 94.052910 converged Fitting Repeat 2 # weights: 507 initial value 129.681915 final value 94.008696 converged Fitting Repeat 3 # weights: 507 initial value 100.869373 final value 94.008696 converged Fitting Repeat 4 # weights: 507 initial value 96.130468 final value 94.008696 converged Fitting Repeat 5 # weights: 507 initial value 101.839759 final value 93.810010 converged Fitting Repeat 1 # weights: 103 initial value 97.997838 iter 10 value 93.722573 iter 20 value 93.468619 iter 30 value 85.639081 iter 40 value 84.559355 iter 50 value 83.749040 iter 60 value 83.245646 iter 70 value 82.749394 iter 80 value 81.281999 iter 90 value 81.094456 final value 81.093711 converged Fitting Repeat 2 # weights: 103 initial value 98.049476 iter 10 value 94.106833 iter 20 value 94.056666 iter 30 value 93.181090 iter 40 value 84.721601 iter 50 value 83.981249 iter 60 value 83.844286 iter 70 value 83.377277 iter 80 value 83.311565 iter 90 value 83.306637 final value 83.306615 converged Fitting Repeat 3 # weights: 103 initial value 101.601308 iter 10 value 93.889706 iter 20 value 89.899464 iter 30 value 87.085079 iter 40 value 85.499468 iter 50 value 84.858568 iter 60 value 84.670388 final value 84.670059 converged Fitting Repeat 4 # weights: 103 initial value 97.468342 iter 10 value 94.055392 iter 20 value 93.871988 iter 30 value 93.584780 iter 40 value 93.220290 iter 50 value 88.478524 iter 60 value 83.455204 iter 70 value 82.610470 iter 80 value 81.836711 iter 90 value 81.705512 iter 100 value 81.654461 final value 81.654461 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 99.122106 iter 10 value 94.056656 iter 20 value 93.836065 iter 30 value 88.250323 iter 40 value 85.242474 iter 50 value 83.536824 iter 60 value 83.319008 iter 70 value 83.309426 iter 70 value 83.309425 iter 70 value 83.309425 final value 83.309425 converged Fitting Repeat 1 # weights: 305 initial value 119.145452 iter 10 value 94.811476 iter 20 value 94.004951 iter 30 value 89.644903 iter 40 value 89.221429 iter 50 value 88.023312 iter 60 value 87.248134 iter 70 value 85.018760 iter 80 value 83.601054 iter 90 value 82.858767 iter 100 value 82.312056 final value 82.312056 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 99.299053 iter 10 value 93.917526 iter 20 value 93.053718 iter 30 value 88.380381 iter 40 value 87.712078 iter 50 value 86.251153 iter 60 value 82.967295 iter 70 value 81.816152 iter 80 value 80.817071 iter 90 value 80.602161 iter 100 value 80.264987 final value 80.264987 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 102.304595 iter 10 value 89.329888 iter 20 value 83.687376 iter 30 value 81.794590 iter 40 value 80.808378 iter 50 value 80.411091 iter 60 value 79.984603 iter 70 value 79.931345 iter 80 value 79.884655 iter 90 value 79.865641 iter 100 value 79.850994 final value 79.850994 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 108.558828 iter 10 value 93.942400 iter 20 value 91.619378 iter 30 value 88.194028 iter 40 value 83.141382 iter 50 value 81.495949 iter 60 value 81.218550 iter 70 value 81.042535 iter 80 value 80.700260 iter 90 value 80.240950 iter 100 value 80.217534 final value 80.217534 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 104.103681 iter 10 value 94.062941 iter 20 value 93.363584 iter 30 value 85.375432 iter 40 value 84.081337 iter 50 value 83.344293 iter 60 value 83.300525 iter 70 value 83.133345 iter 80 value 83.029006 iter 90 value 82.170103 iter 100 value 81.891119 final value 81.891119 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 107.599981 iter 10 value 94.411449 iter 20 value 94.084043 iter 30 value 93.603333 iter 40 value 93.471848 iter 50 value 89.403475 iter 60 value 87.988184 iter 70 value 84.899111 iter 80 value 81.590147 iter 90 value 81.154706 iter 100 value 80.715453 final value 80.715453 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 106.865546 iter 10 value 94.197913 iter 20 value 93.912305 iter 30 value 91.582132 iter 40 value 88.329237 iter 50 value 82.812720 iter 60 value 82.565840 iter 70 value 82.460350 iter 80 value 81.634878 iter 90 value 80.844460 iter 100 value 80.128790 final value 80.128790 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 105.631775 iter 10 value 94.075080 iter 20 value 93.045358 iter 30 value 88.271307 iter 40 value 87.253358 iter 50 value 84.500543 iter 60 value 82.619879 iter 70 value 82.173717 iter 80 value 81.082663 iter 90 value 80.882729 iter 100 value 80.740415 final value 80.740415 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 105.465718 iter 10 value 94.202861 iter 20 value 93.582564 iter 30 value 89.648044 iter 40 value 84.677767 iter 50 value 83.814315 iter 60 value 83.669865 iter 70 value 82.297531 iter 80 value 80.580964 iter 90 value 80.155305 iter 100 value 79.619200 final value 79.619200 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 118.606507 iter 10 value 94.423813 iter 20 value 93.541727 iter 30 value 86.607992 iter 40 value 82.539438 iter 50 value 81.942106 iter 60 value 81.174354 iter 70 value 80.928893 iter 80 value 80.771933 iter 90 value 80.548915 iter 100 value 80.424985 final value 80.424985 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 94.707123 final value 94.054509 converged Fitting Repeat 2 # weights: 103 initial value 104.935854 final value 94.010420 converged Fitting Repeat 3 # weights: 103 initial value 96.638871 final value 94.054802 converged Fitting Repeat 4 # weights: 103 initial value 94.625819 final value 94.054801 converged Fitting Repeat 5 # weights: 103 initial value 99.967572 iter 10 value 94.054681 iter 20 value 94.038320 iter 30 value 85.666455 iter 40 value 85.654284 iter 50 value 85.611902 iter 60 value 85.610389 iter 70 value 84.531336 iter 80 value 84.496395 final value 84.494975 converged Fitting Repeat 1 # weights: 305 initial value 95.371788 iter 10 value 94.058385 iter 20 value 94.052977 iter 30 value 92.558752 iter 40 value 91.434520 iter 50 value 91.430874 final value 91.430499 converged Fitting Repeat 2 # weights: 305 initial value 98.020142 iter 10 value 94.057375 iter 20 value 94.041758 iter 30 value 87.253693 iter 40 value 85.216680 iter 50 value 85.134355 final value 85.134147 converged Fitting Repeat 3 # weights: 305 initial value 119.227846 iter 10 value 94.057648 iter 20 value 93.697099 iter 30 value 93.535585 iter 40 value 93.535410 iter 40 value 93.535410 iter 40 value 93.535410 final value 93.535410 converged Fitting Repeat 4 # weights: 305 initial value 99.518044 iter 10 value 94.062166 iter 20 value 94.056407 final value 94.056405 converged Fitting Repeat 5 # weights: 305 initial value 98.303251 iter 10 value 94.013988 iter 20 value 94.010257 iter 30 value 94.008799 iter 40 value 93.543323 iter 50 value 91.554079 iter 60 value 84.550071 iter 70 value 84.457122 iter 80 value 84.433456 iter 90 value 84.423387 iter 100 value 83.183739 final value 83.183739 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 94.715645 iter 10 value 94.061245 iter 20 value 92.811563 iter 30 value 87.461031 iter 40 value 86.969981 iter 50 value 85.660481 iter 60 value 85.607857 iter 70 value 85.606245 iter 80 value 85.605515 iter 90 value 85.304304 iter 100 value 85.246450 final value 85.246450 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 107.682139 iter 10 value 94.061207 iter 20 value 94.051609 iter 30 value 93.720080 iter 40 value 93.517235 iter 50 value 93.474785 iter 60 value 84.342253 iter 70 value 83.407718 iter 80 value 83.404367 final value 83.402593 converged Fitting Repeat 3 # weights: 507 initial value 125.407260 iter 10 value 93.789459 iter 20 value 93.712974 iter 30 value 93.706165 iter 40 value 93.676003 iter 50 value 93.670326 iter 60 value 93.667019 iter 70 value 93.398869 iter 80 value 93.345709 iter 90 value 93.333441 iter 100 value 93.333356 final value 93.333356 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 101.182498 iter 10 value 94.061332 iter 20 value 94.012891 iter 30 value 94.009112 iter 40 value 86.140554 iter 50 value 84.341063 iter 60 value 81.368146 iter 70 value 80.483641 iter 80 value 80.143831 iter 90 value 78.104399 iter 100 value 78.021306 final value 78.021306 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 130.146038 iter 10 value 93.891146 iter 20 value 93.650048 iter 30 value 93.645874 iter 40 value 93.643953 iter 50 value 93.517243 iter 60 value 93.386211 iter 70 value 93.356797 iter 80 value 93.333535 iter 90 value 88.794069 iter 100 value 87.342506 final value 87.342506 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 113.826874 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 95.856850 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 94.244482 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 94.204332 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 95.575399 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 100.684665 final value 94.052910 converged Fitting Repeat 2 # weights: 305 initial value 97.337845 final value 94.052910 converged Fitting Repeat 3 # weights: 305 initial value 97.471420 final value 94.052910 converged Fitting Repeat 4 # weights: 305 initial value 106.199408 final value 94.052910 converged Fitting Repeat 5 # weights: 305 initial value 100.252819 iter 10 value 91.249848 iter 20 value 86.505346 iter 30 value 84.482951 iter 40 value 84.158680 iter 50 value 83.763069 iter 60 value 83.756131 iter 70 value 80.670042 iter 80 value 79.908775 final value 79.908640 converged Fitting Repeat 1 # weights: 507 initial value 101.593808 iter 10 value 91.499783 iter 20 value 82.760924 iter 30 value 82.464794 iter 40 value 82.464693 final value 82.464672 converged Fitting Repeat 2 # weights: 507 initial value 111.208278 iter 10 value 93.582319 iter 20 value 92.820218 iter 30 value 92.818769 final value 92.818726 converged Fitting Repeat 3 # weights: 507 initial value 99.586143 iter 10 value 92.568223 iter 20 value 88.430972 iter 30 value 88.382380 iter 40 value 88.378829 iter 50 value 88.373477 iter 50 value 88.373477 iter 50 value 88.373477 final value 88.373477 converged Fitting Repeat 4 # weights: 507 initial value 118.376546 final value 94.052910 converged Fitting Repeat 5 # weights: 507 initial value 114.422931 iter 10 value 93.628453 iter 10 value 93.628453 iter 10 value 93.628453 final value 93.628453 converged Fitting Repeat 1 # weights: 103 initial value 105.957534 iter 10 value 93.844989 iter 20 value 85.957439 iter 30 value 84.995938 iter 40 value 82.584277 iter 50 value 82.455660 iter 60 value 82.213177 iter 70 value 81.664489 iter 80 value 80.726348 iter 90 value 80.462735 iter 100 value 80.070459 final value 80.070459 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 98.807975 iter 10 value 94.055041 final value 94.054860 converged Fitting Repeat 3 # weights: 103 initial value 104.875548 iter 10 value 94.008426 iter 20 value 93.112520 iter 30 value 91.904818 iter 40 value 85.117907 iter 50 value 84.156863 iter 60 value 81.849734 iter 70 value 80.706310 iter 80 value 80.423303 iter 90 value 80.015262 iter 100 value 79.997842 final value 79.997842 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 101.820921 iter 10 value 93.490324 iter 20 value 85.157024 iter 30 value 84.359263 iter 40 value 83.806931 iter 50 value 83.421984 iter 60 value 83.356044 final value 83.355983 converged Fitting Repeat 5 # weights: 103 initial value 95.999768 iter 10 value 94.008177 iter 20 value 84.558418 iter 30 value 83.050872 iter 40 value 82.743762 iter 50 value 82.227694 iter 60 value 81.843260 iter 70 value 81.757378 iter 80 value 81.727522 iter 90 value 81.702255 final value 81.696989 converged Fitting Repeat 1 # weights: 305 initial value 103.812487 iter 10 value 91.380748 iter 20 value 88.423540 iter 30 value 82.149876 iter 40 value 80.610799 iter 50 value 79.577346 iter 60 value 79.124447 iter 70 value 78.922516 iter 80 value 78.737340 iter 90 value 78.624910 iter 100 value 78.557123 final value 78.557123 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 124.813891 iter 10 value 94.899325 iter 20 value 89.499762 iter 30 value 86.326916 iter 40 value 85.869876 iter 50 value 82.784813 iter 60 value 81.325909 iter 70 value 81.058480 iter 80 value 81.021890 iter 90 value 80.428140 iter 100 value 79.544326 final value 79.544326 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 100.575747 iter 10 value 93.769155 iter 20 value 88.389126 iter 30 value 82.816857 iter 40 value 81.909579 iter 50 value 80.654909 iter 60 value 80.040749 iter 70 value 79.843626 iter 80 value 79.499279 iter 90 value 79.345799 iter 100 value 79.203167 final value 79.203167 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 100.208854 iter 10 value 93.625562 iter 20 value 87.291091 iter 30 value 84.934160 iter 40 value 82.448320 iter 50 value 81.990464 iter 60 value 80.936066 iter 70 value 79.643281 iter 80 value 79.084225 iter 90 value 79.019863 iter 100 value 78.903709 final value 78.903709 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 109.776721 iter 10 value 93.903046 iter 20 value 86.395512 iter 30 value 84.938029 iter 40 value 84.250153 iter 50 value 83.857264 iter 60 value 81.856435 iter 70 value 81.017476 iter 80 value 80.931284 iter 90 value 80.766151 iter 100 value 79.672044 final value 79.672044 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 111.684592 iter 10 value 92.560054 iter 20 value 88.808515 iter 30 value 84.652031 iter 40 value 82.545181 iter 50 value 80.925559 iter 60 value 80.336724 iter 70 value 79.507126 iter 80 value 79.294754 iter 90 value 79.087484 iter 100 value 78.961362 final value 78.961362 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 108.988467 iter 10 value 94.702283 iter 20 value 93.496240 iter 30 value 85.220392 iter 40 value 84.395523 iter 50 value 83.929217 iter 60 value 83.461005 iter 70 value 80.382338 iter 80 value 79.368072 iter 90 value 79.090445 iter 100 value 79.047079 final value 79.047079 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 152.823025 iter 10 value 98.101196 iter 20 value 90.515309 iter 30 value 86.917183 iter 40 value 85.780923 iter 50 value 81.893846 iter 60 value 79.858783 iter 70 value 79.564141 iter 80 value 79.439610 iter 90 value 78.960106 iter 100 value 78.629971 final value 78.629971 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 112.713187 iter 10 value 93.117876 iter 20 value 92.921127 iter 30 value 92.240487 iter 40 value 89.798304 iter 50 value 88.120211 iter 60 value 86.330071 iter 70 value 82.258195 iter 80 value 80.483181 iter 90 value 80.258128 iter 100 value 79.945881 final value 79.945881 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 106.237882 iter 10 value 93.951148 iter 20 value 89.757119 iter 30 value 85.136438 iter 40 value 81.051120 iter 50 value 80.993616 iter 60 value 80.481427 iter 70 value 80.140712 iter 80 value 79.508005 iter 90 value 79.290842 iter 100 value 79.204843 final value 79.204843 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 103.882803 final value 94.054682 converged Fitting Repeat 2 # weights: 103 initial value 98.125969 final value 94.054529 converged Fitting Repeat 3 # weights: 103 initial value 99.898967 final value 93.584158 converged Fitting Repeat 4 # weights: 103 initial value 98.361477 iter 10 value 93.584138 final value 93.584133 converged Fitting Repeat 5 # weights: 103 initial value 97.291305 final value 94.054581 converged Fitting Repeat 1 # weights: 305 initial value 101.219836 iter 10 value 94.057926 iter 20 value 93.604365 iter 30 value 92.917181 iter 40 value 89.106557 iter 50 value 81.698669 iter 60 value 81.601013 iter 70 value 81.199922 iter 80 value 80.430984 iter 90 value 80.123186 iter 100 value 79.962452 final value 79.962452 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 97.433419 iter 10 value 93.587581 iter 20 value 93.584866 iter 30 value 92.893876 iter 40 value 92.862213 final value 92.862126 converged Fitting Repeat 3 # weights: 305 initial value 96.106536 iter 10 value 94.057250 iter 20 value 93.934668 final value 92.862615 converged Fitting Repeat 4 # weights: 305 initial value 104.127786 iter 10 value 93.466819 iter 20 value 93.453424 iter 30 value 92.879036 iter 40 value 92.823273 iter 50 value 92.820728 iter 60 value 90.464739 iter 70 value 86.575138 iter 80 value 82.233735 iter 90 value 80.613751 iter 100 value 80.376838 final value 80.376838 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 104.606729 iter 10 value 93.293625 iter 20 value 93.289299 iter 30 value 90.430426 iter 40 value 85.487341 iter 50 value 85.482843 iter 60 value 85.443392 iter 70 value 85.434084 iter 80 value 85.433567 final value 85.433195 converged Fitting Repeat 1 # weights: 507 initial value 111.664016 iter 10 value 93.995926 iter 20 value 93.789895 final value 93.583608 converged Fitting Repeat 2 # weights: 507 initial value 104.023987 iter 10 value 94.061186 iter 20 value 94.049409 iter 30 value 94.039582 iter 40 value 91.722906 iter 50 value 87.738608 iter 60 value 85.770775 iter 70 value 84.352514 iter 80 value 82.183814 iter 90 value 82.066246 iter 100 value 82.065049 final value 82.065049 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 109.533767 iter 10 value 94.061206 iter 20 value 94.052162 iter 30 value 92.863631 iter 30 value 92.863630 iter 30 value 92.863630 final value 92.863630 converged Fitting Repeat 4 # weights: 507 initial value 116.423464 iter 10 value 93.590991 iter 20 value 93.583247 final value 93.582805 converged Fitting Repeat 5 # weights: 507 initial value 99.415262 iter 10 value 90.078570 iter 20 value 89.055999 iter 30 value 89.050847 iter 40 value 89.016506 iter 50 value 85.551916 iter 60 value 84.623437 iter 70 value 84.613394 iter 80 value 84.612779 iter 90 value 83.942973 iter 100 value 81.862437 final value 81.862437 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 98.012363 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 96.946135 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 106.715740 final value 94.466823 converged Fitting Repeat 4 # weights: 103 initial value 94.654782 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 95.294596 final value 94.428839 converged Fitting Repeat 1 # weights: 305 initial value 103.183444 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 118.903794 final value 94.466823 converged Fitting Repeat 3 # weights: 305 initial value 102.707790 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 109.669473 iter 10 value 92.379303 final value 88.350679 converged Fitting Repeat 5 # weights: 305 initial value 106.715984 final value 94.484211 converged Fitting Repeat 1 # weights: 507 initial value 110.843570 iter 10 value 94.441295 iter 10 value 94.441294 iter 10 value 94.441294 final value 94.441294 converged Fitting Repeat 2 # weights: 507 initial value 125.691806 final value 94.484211 converged Fitting Repeat 3 # weights: 507 initial value 97.910391 iter 10 value 94.442772 iter 20 value 94.442074 iter 20 value 94.442073 iter 20 value 94.442073 final value 94.442073 converged Fitting Repeat 4 # weights: 507 initial value 101.203982 final value 94.484211 converged Fitting Repeat 5 # weights: 507 initial value 97.750809 final value 94.466823 converged Fitting Repeat 1 # weights: 103 initial value 98.112408 iter 10 value 94.543098 iter 20 value 94.272231 iter 30 value 90.073274 iter 40 value 87.188587 iter 50 value 85.251428 iter 60 value 85.044446 iter 70 value 84.999309 iter 80 value 83.728699 iter 90 value 83.189205 iter 100 value 83.047419 final value 83.047419 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 98.328167 iter 10 value 94.488289 iter 20 value 94.475345 iter 30 value 94.274677 iter 40 value 94.235305 iter 50 value 90.560152 iter 60 value 88.529144 iter 70 value 88.087350 iter 80 value 87.757083 iter 90 value 87.711422 iter 100 value 87.639399 final value 87.639399 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 96.607417 iter 10 value 94.480020 iter 20 value 93.694585 iter 30 value 89.423769 iter 40 value 88.037374 iter 50 value 86.921843 iter 60 value 86.781052 iter 70 value 86.589626 iter 80 value 86.403558 iter 90 value 86.207653 final value 86.204867 converged Fitting Repeat 4 # weights: 103 initial value 109.490823 iter 10 value 94.482411 iter 20 value 93.751316 iter 30 value 88.477137 iter 40 value 87.996939 iter 50 value 86.357957 iter 60 value 85.422780 iter 70 value 85.012762 iter 80 value 84.998050 final value 84.998048 converged Fitting Repeat 5 # weights: 103 initial value 96.750686 iter 10 value 94.474160 iter 20 value 93.199676 iter 30 value 91.056885 iter 40 value 87.961809 iter 50 value 85.714260 iter 60 value 84.016431 iter 70 value 83.591849 iter 80 value 83.543707 final value 83.542191 converged Fitting Repeat 1 # weights: 305 initial value 106.460456 iter 10 value 92.539190 iter 20 value 92.234719 iter 30 value 92.205040 iter 40 value 89.917545 iter 50 value 87.806779 iter 60 value 86.569266 iter 70 value 84.568367 iter 80 value 84.043799 iter 90 value 83.802903 iter 100 value 83.760348 final value 83.760348 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 107.231814 iter 10 value 94.491174 iter 20 value 94.318735 iter 30 value 92.724226 iter 40 value 92.179834 iter 50 value 92.049825 iter 60 value 87.342515 iter 70 value 85.915988 iter 80 value 84.938144 iter 90 value 84.111565 iter 100 value 83.643067 final value 83.643067 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 117.297391 iter 10 value 95.372049 iter 20 value 88.648140 iter 30 value 86.544253 iter 40 value 84.736078 iter 50 value 83.974509 iter 60 value 83.831743 iter 70 value 83.721738 iter 80 value 83.598275 iter 90 value 83.051174 iter 100 value 82.954245 final value 82.954245 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 102.783117 iter 10 value 94.581469 iter 20 value 94.377506 iter 30 value 88.209172 iter 40 value 87.605213 iter 50 value 86.504164 iter 60 value 85.762650 iter 70 value 84.126589 iter 80 value 82.566427 iter 90 value 81.932637 iter 100 value 81.789286 final value 81.789286 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 99.989108 iter 10 value 94.501271 iter 20 value 93.909908 iter 30 value 93.265096 iter 40 value 87.863198 iter 50 value 86.190129 iter 60 value 85.103636 iter 70 value 84.821735 iter 80 value 84.751719 iter 90 value 84.053727 iter 100 value 83.820233 final value 83.820233 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 121.992606 iter 10 value 91.187794 iter 20 value 86.872880 iter 30 value 86.416423 iter 40 value 85.954674 iter 50 value 83.532328 iter 60 value 83.236532 iter 70 value 83.036489 iter 80 value 82.957598 iter 90 value 82.766635 iter 100 value 82.436331 final value 82.436331 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 106.841368 iter 10 value 95.054346 iter 20 value 91.594967 iter 30 value 90.279334 iter 40 value 90.149424 iter 50 value 88.959446 iter 60 value 88.111009 iter 70 value 87.227056 iter 80 value 85.537087 iter 90 value 83.972478 iter 100 value 83.425356 final value 83.425356 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 103.952166 iter 10 value 93.106923 iter 20 value 89.536624 iter 30 value 87.475554 iter 40 value 83.030651 iter 50 value 81.508389 iter 60 value 81.285386 iter 70 value 81.250156 iter 80 value 81.226325 iter 90 value 81.203122 iter 100 value 81.200861 final value 81.200861 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 109.029285 iter 10 value 94.445918 iter 20 value 93.851640 iter 30 value 91.185419 iter 40 value 86.859746 iter 50 value 84.625014 iter 60 value 83.217701 iter 70 value 82.597382 iter 80 value 82.274646 iter 90 value 82.050593 iter 100 value 81.712362 final value 81.712362 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 104.417564 iter 10 value 94.603078 iter 20 value 91.561455 iter 30 value 89.388422 iter 40 value 86.262524 iter 50 value 84.892636 iter 60 value 82.571994 iter 70 value 82.000820 iter 80 value 81.838196 iter 90 value 81.573825 iter 100 value 81.323990 final value 81.323990 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 102.414210 final value 94.485837 converged Fitting Repeat 2 # weights: 103 initial value 111.734695 final value 94.486052 converged Fitting Repeat 3 # weights: 103 initial value 97.011710 final value 94.486049 converged Fitting Repeat 4 # weights: 103 initial value 95.970981 final value 94.485994 converged Fitting Repeat 5 # weights: 103 initial value 115.629969 final value 94.486181 converged Fitting Repeat 1 # weights: 305 initial value 111.844278 iter 10 value 94.471808 iter 20 value 94.467604 iter 30 value 88.660523 iter 40 value 87.924673 iter 50 value 87.923247 iter 60 value 87.772528 iter 70 value 87.700668 iter 80 value 85.956572 iter 90 value 85.649602 iter 100 value 85.648831 final value 85.648831 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 97.380673 iter 10 value 94.472040 iter 20 value 94.466975 iter 30 value 94.466950 final value 94.466944 converged Fitting Repeat 3 # weights: 305 initial value 96.291293 iter 10 value 94.488502 iter 20 value 94.463658 iter 30 value 86.780052 iter 40 value 86.477657 iter 50 value 86.472136 iter 60 value 86.472057 final value 86.472010 converged Fitting Repeat 4 # weights: 305 initial value 111.662714 iter 10 value 94.490835 iter 20 value 94.427644 iter 30 value 92.258656 iter 40 value 88.545643 iter 50 value 88.542898 iter 60 value 87.348690 iter 70 value 85.580201 iter 80 value 85.573915 iter 90 value 85.407637 iter 100 value 84.533636 final value 84.533636 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 106.507777 iter 10 value 88.557211 iter 20 value 86.645938 iter 30 value 86.641728 iter 40 value 86.639324 iter 50 value 85.164204 iter 60 value 84.972711 iter 70 value 84.619209 iter 80 value 84.558497 final value 84.558037 converged Fitting Repeat 1 # weights: 507 initial value 107.336210 iter 10 value 94.474854 iter 20 value 94.467874 final value 94.467004 converged Fitting Repeat 2 # weights: 507 initial value 111.290706 iter 10 value 93.440147 iter 20 value 88.392556 iter 30 value 85.725140 iter 40 value 82.943549 iter 50 value 81.988353 iter 60 value 81.459653 iter 70 value 81.451200 iter 80 value 81.404372 iter 90 value 81.384235 iter 100 value 81.383770 final value 81.383770 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 97.959111 iter 10 value 94.484868 iter 20 value 94.427912 iter 30 value 94.320940 iter 40 value 94.289397 iter 50 value 94.289176 iter 60 value 94.287767 final value 94.287760 converged Fitting Repeat 4 # weights: 507 initial value 113.497699 iter 10 value 94.474646 iter 20 value 94.466927 iter 30 value 94.438846 iter 40 value 87.944409 iter 50 value 87.776037 iter 60 value 85.643457 iter 70 value 82.740452 iter 80 value 82.713134 final value 82.713101 converged Fitting Repeat 5 # weights: 507 initial value 96.959645 iter 10 value 94.491470 iter 20 value 94.441039 iter 30 value 93.044474 iter 40 value 86.303651 iter 50 value 86.077798 iter 60 value 85.860314 iter 70 value 84.218189 iter 80 value 83.868418 iter 90 value 83.754388 iter 100 value 83.609904 final value 83.609904 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 102.366412 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 97.767542 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 102.960213 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 106.601363 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 98.127606 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 99.704615 iter 10 value 94.467391 iter 10 value 94.467391 iter 10 value 94.467391 final value 94.467391 converged Fitting Repeat 2 # weights: 305 initial value 97.519194 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 102.360149 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 93.974401 iter 10 value 84.167637 iter 20 value 83.583799 final value 83.510375 converged Fitting Repeat 5 # weights: 305 initial value 105.846319 final value 93.300000 converged Fitting Repeat 1 # weights: 507 initial value 98.782767 final value 94.467391 converged Fitting Repeat 2 # weights: 507 initial value 105.259313 final value 94.484211 converged Fitting Repeat 3 # weights: 507 initial value 96.640386 final value 94.467391 converged Fitting Repeat 4 # weights: 507 initial value 101.536247 iter 10 value 94.437537 final value 94.423539 converged Fitting Repeat 5 # weights: 507 initial value 101.720917 final value 94.467391 converged Fitting Repeat 1 # weights: 103 initial value 101.312011 iter 10 value 94.470350 iter 20 value 93.463080 iter 30 value 87.516611 iter 40 value 85.154308 iter 50 value 84.081519 iter 60 value 83.927779 iter 70 value 83.696686 iter 80 value 83.495026 iter 90 value 83.384062 iter 100 value 83.246047 final value 83.246047 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 106.871684 iter 10 value 94.452519 iter 20 value 91.303820 iter 30 value 88.110198 iter 40 value 87.045168 iter 50 value 86.530777 iter 60 value 85.279582 iter 70 value 84.861012 final value 84.759943 converged Fitting Repeat 3 # weights: 103 initial value 96.969665 iter 10 value 94.412124 iter 20 value 92.327733 iter 30 value 89.118293 iter 40 value 88.126014 iter 50 value 85.067457 iter 60 value 84.947209 iter 70 value 84.798641 iter 80 value 84.105265 iter 90 value 83.936506 iter 100 value 83.838211 final value 83.838211 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 99.809855 iter 10 value 94.510602 iter 20 value 93.835174 iter 30 value 87.763921 iter 40 value 85.843805 iter 50 value 85.079027 iter 60 value 84.734259 iter 70 value 84.245943 iter 80 value 83.810077 final value 83.784413 converged Fitting Repeat 5 # weights: 103 initial value 96.326742 iter 10 value 94.503624 iter 20 value 90.227931 iter 30 value 88.733545 iter 40 value 86.756178 iter 50 value 86.150811 iter 60 value 84.426612 iter 70 value 83.960209 iter 80 value 83.954134 final value 83.954131 converged Fitting Repeat 1 # weights: 305 initial value 102.900045 iter 10 value 94.354257 iter 20 value 88.817067 iter 30 value 87.196496 iter 40 value 86.929074 iter 50 value 86.448636 iter 60 value 85.323673 iter 70 value 83.783568 iter 80 value 82.194250 iter 90 value 81.874169 iter 100 value 81.712862 final value 81.712862 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 111.645187 iter 10 value 94.940832 iter 20 value 94.581493 iter 30 value 93.835164 iter 40 value 85.414328 iter 50 value 85.008199 iter 60 value 84.221444 iter 70 value 82.597860 iter 80 value 82.139885 iter 90 value 82.108544 iter 100 value 81.994310 final value 81.994310 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 99.328567 iter 10 value 90.439515 iter 20 value 85.214488 iter 30 value 84.300967 iter 40 value 84.205988 iter 50 value 83.710321 iter 60 value 82.970246 iter 70 value 82.308599 iter 80 value 82.056907 iter 90 value 82.012242 iter 100 value 82.002414 final value 82.002414 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 108.110772 iter 10 value 94.454156 iter 20 value 88.572530 iter 30 value 85.290663 iter 40 value 83.434980 iter 50 value 83.092172 iter 60 value 82.796451 iter 70 value 82.741956 iter 80 value 82.680281 iter 90 value 82.538057 iter 100 value 82.370343 final value 82.370343 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 101.940798 iter 10 value 94.505017 iter 20 value 93.791488 iter 30 value 91.271427 iter 40 value 90.858262 iter 50 value 90.791596 iter 60 value 85.717572 iter 70 value 84.453780 iter 80 value 83.506394 iter 90 value 83.143892 iter 100 value 83.104898 final value 83.104898 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 115.687931 iter 10 value 94.546674 iter 20 value 94.276009 iter 30 value 93.763524 iter 40 value 87.151072 iter 50 value 84.175244 iter 60 value 83.381917 iter 70 value 82.913507 iter 80 value 82.620060 iter 90 value 82.389076 iter 100 value 82.314563 final value 82.314563 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 149.102477 iter 10 value 96.522675 iter 20 value 94.740766 iter 30 value 90.406488 iter 40 value 87.441966 iter 50 value 84.895418 iter 60 value 84.102669 iter 70 value 82.664052 iter 80 value 82.317445 iter 90 value 82.076073 iter 100 value 81.903708 final value 81.903708 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 113.817925 iter 10 value 95.007450 iter 20 value 87.585770 iter 30 value 85.534803 iter 40 value 85.250081 iter 50 value 84.998820 iter 60 value 84.145996 iter 70 value 83.913296 iter 80 value 82.420528 iter 90 value 81.867444 iter 100 value 81.775090 final value 81.775090 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 110.262430 iter 10 value 94.510189 iter 20 value 94.400567 iter 30 value 89.547657 iter 40 value 86.824916 iter 50 value 83.277472 iter 60 value 82.742577 iter 70 value 82.564441 iter 80 value 82.308620 iter 90 value 82.143915 iter 100 value 82.101389 final value 82.101389 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 108.526487 iter 10 value 94.521624 iter 20 value 93.472950 iter 30 value 86.911355 iter 40 value 85.936298 iter 50 value 83.322671 iter 60 value 82.844903 iter 70 value 82.787834 iter 80 value 82.637358 iter 90 value 82.568806 iter 100 value 82.238011 final value 82.238011 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 102.989400 iter 10 value 94.486136 iter 20 value 94.484308 iter 30 value 92.432732 iter 40 value 86.249809 iter 50 value 85.969815 iter 60 value 85.953027 final value 85.952974 converged Fitting Repeat 2 # weights: 103 initial value 96.614639 iter 10 value 94.488828 final value 94.487113 converged Fitting Repeat 3 # weights: 103 initial value 100.865462 final value 94.486008 converged Fitting Repeat 4 # weights: 103 initial value 95.120055 final value 94.485727 converged Fitting Repeat 5 # weights: 103 initial value 98.760288 final value 94.485822 converged Fitting Repeat 1 # weights: 305 initial value 117.354561 iter 10 value 86.202095 iter 20 value 84.430437 iter 30 value 84.425497 iter 40 value 84.347397 iter 50 value 84.324857 iter 60 value 84.320165 final value 84.320074 converged Fitting Repeat 2 # weights: 305 initial value 97.312506 iter 10 value 94.489381 iter 20 value 94.293532 iter 30 value 88.824496 iter 40 value 88.421936 iter 50 value 81.927755 iter 60 value 81.712646 iter 70 value 81.712235 iter 80 value 81.710444 iter 90 value 81.693264 iter 100 value 81.692524 final value 81.692524 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 95.847265 iter 10 value 94.448103 iter 20 value 90.411030 iter 30 value 88.016990 iter 40 value 87.773690 iter 50 value 86.131538 iter 60 value 86.084590 final value 86.084250 converged Fitting Repeat 4 # weights: 305 initial value 111.038531 iter 10 value 94.488957 iter 20 value 91.463743 iter 30 value 83.847908 iter 40 value 83.331386 final value 83.321633 converged Fitting Repeat 5 # weights: 305 initial value 99.366140 iter 10 value 94.472654 iter 20 value 91.649493 iter 30 value 86.806212 iter 40 value 86.364187 iter 50 value 86.036866 iter 60 value 85.664579 final value 85.661421 converged Fitting Repeat 1 # weights: 507 initial value 96.716852 iter 10 value 86.209545 iter 20 value 86.206413 iter 30 value 84.167329 iter 40 value 84.167189 iter 50 value 84.165723 final value 84.165521 converged Fitting Repeat 2 # weights: 507 initial value 97.126819 iter 10 value 94.491656 iter 20 value 94.491103 iter 30 value 94.460984 iter 40 value 86.272718 iter 50 value 85.877339 iter 60 value 85.608866 iter 70 value 82.273345 iter 80 value 81.823638 final value 81.823026 converged Fitting Repeat 3 # weights: 507 initial value 106.184062 iter 10 value 94.497681 iter 20 value 94.489578 iter 30 value 92.054468 iter 40 value 91.922899 iter 50 value 90.369776 iter 60 value 85.682165 iter 70 value 85.118599 iter 80 value 85.116205 iter 90 value 84.154857 iter 100 value 83.222844 final value 83.222844 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 101.843751 iter 10 value 94.491214 iter 20 value 94.224586 iter 30 value 89.693007 iter 40 value 86.698431 iter 50 value 86.312436 iter 60 value 86.086512 iter 70 value 86.083217 iter 80 value 86.082307 iter 90 value 85.667946 iter 100 value 84.635556 final value 84.635556 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 99.133542 iter 10 value 94.493763 iter 20 value 94.485005 iter 30 value 92.237126 iter 40 value 86.538178 iter 50 value 84.499253 iter 60 value 82.538556 iter 70 value 82.532016 iter 80 value 82.512702 iter 90 value 82.359721 iter 100 value 82.182740 final value 82.182740 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 95.304169 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 103.703315 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 96.043263 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 101.268291 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 95.959691 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 99.576541 iter 10 value 93.157475 final value 93.157468 converged Fitting Repeat 2 # weights: 305 initial value 112.770959 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 94.922227 final value 93.567525 converged Fitting Repeat 4 # weights: 305 initial value 99.992669 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 99.401068 iter 10 value 94.265055 final value 94.263153 converged Fitting Repeat 1 # weights: 507 initial value 126.362604 final value 94.484211 converged Fitting Repeat 2 # weights: 507 initial value 101.060136 final value 94.484211 converged Fitting Repeat 3 # weights: 507 initial value 120.274398 final value 94.312038 converged Fitting Repeat 4 # weights: 507 initial value 107.810781 iter 10 value 91.600500 iter 20 value 86.053801 final value 86.053792 converged Fitting Repeat 5 # weights: 507 initial value 112.495976 final value 94.484211 converged Fitting Repeat 1 # weights: 103 initial value 106.131669 iter 10 value 94.476547 iter 20 value 84.538592 iter 30 value 83.577145 iter 40 value 82.848878 iter 50 value 81.383142 iter 60 value 81.094521 final value 81.080871 converged Fitting Repeat 2 # weights: 103 initial value 103.767754 iter 10 value 94.494472 iter 20 value 94.477718 iter 30 value 83.977957 iter 40 value 82.042922 iter 50 value 81.848663 iter 60 value 81.812759 iter 70 value 81.810695 iter 70 value 81.810695 iter 70 value 81.810695 final value 81.810695 converged Fitting Repeat 3 # weights: 103 initial value 105.543448 iter 10 value 94.263982 iter 20 value 88.984963 iter 30 value 87.823041 iter 40 value 86.338260 iter 50 value 85.607190 iter 60 value 81.482855 iter 70 value 79.061856 iter 80 value 78.620207 iter 90 value 78.599943 iter 100 value 78.599137 final value 78.599137 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 114.205096 iter 10 value 94.487910 iter 20 value 94.486012 iter 30 value 84.594604 iter 40 value 83.096064 iter 50 value 81.930897 iter 60 value 81.812333 iter 70 value 81.810701 final value 81.810695 converged Fitting Repeat 5 # weights: 103 initial value 97.536321 iter 10 value 92.417089 iter 20 value 83.531964 iter 30 value 82.310963 iter 40 value 81.871745 iter 50 value 81.810924 final value 81.810695 converged Fitting Repeat 1 # weights: 305 initial value 107.125157 iter 10 value 94.518565 iter 20 value 87.571634 iter 30 value 85.851142 iter 40 value 82.095808 iter 50 value 81.543284 iter 60 value 81.444852 iter 70 value 81.226695 iter 80 value 79.372790 iter 90 value 77.772288 iter 100 value 77.138345 final value 77.138345 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 105.482175 iter 10 value 94.587261 iter 20 value 91.348346 iter 30 value 89.832502 iter 40 value 89.430631 iter 50 value 80.261013 iter 60 value 79.713937 iter 70 value 79.375729 iter 80 value 78.965946 iter 90 value 78.425217 iter 100 value 77.491405 final value 77.491405 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 102.958584 iter 10 value 93.533386 iter 20 value 89.065647 iter 30 value 88.046400 iter 40 value 84.653453 iter 50 value 81.327367 iter 60 value 80.739576 iter 70 value 79.609679 iter 80 value 78.728200 iter 90 value 78.613511 iter 100 value 78.221458 final value 78.221458 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 108.339346 iter 10 value 92.863512 iter 20 value 88.306807 iter 30 value 84.985404 iter 40 value 82.398146 iter 50 value 80.874584 iter 60 value 80.643607 iter 70 value 80.404186 iter 80 value 79.413660 iter 90 value 77.403333 iter 100 value 77.127105 final value 77.127105 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 109.946560 iter 10 value 95.797308 iter 20 value 93.944570 iter 30 value 87.609394 iter 40 value 86.390729 iter 50 value 79.073694 iter 60 value 78.639550 iter 70 value 78.172957 iter 80 value 77.609454 iter 90 value 77.354225 iter 100 value 77.255072 final value 77.255072 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 123.440853 iter 10 value 94.553586 iter 20 value 94.408060 iter 30 value 93.828990 iter 40 value 88.973614 iter 50 value 87.615137 iter 60 value 85.460336 iter 70 value 81.911965 iter 80 value 78.829044 iter 90 value 77.660851 iter 100 value 77.085283 final value 77.085283 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 116.315943 iter 10 value 94.469036 iter 20 value 89.016130 iter 30 value 83.907347 iter 40 value 82.909708 iter 50 value 81.363462 iter 60 value 80.924470 iter 70 value 80.783718 iter 80 value 80.376222 iter 90 value 80.253675 iter 100 value 79.286022 final value 79.286022 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 105.098788 iter 10 value 94.449559 iter 20 value 93.177730 iter 30 value 85.900130 iter 40 value 83.403495 iter 50 value 81.821277 iter 60 value 81.430508 iter 70 value 80.265066 iter 80 value 79.899374 iter 90 value 79.567645 iter 100 value 79.131566 final value 79.131566 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 117.156725 iter 10 value 93.420344 iter 20 value 87.336649 iter 30 value 85.620604 iter 40 value 82.026558 iter 50 value 80.731691 iter 60 value 79.959602 iter 70 value 79.241072 iter 80 value 78.779095 iter 90 value 78.364652 iter 100 value 78.137669 final value 78.137669 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 103.896211 iter 10 value 89.257257 iter 20 value 83.800933 iter 30 value 81.635738 iter 40 value 80.468599 iter 50 value 79.507183 iter 60 value 78.303342 iter 70 value 77.819324 iter 80 value 77.410625 iter 90 value 77.292560 iter 100 value 77.200481 final value 77.200481 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 107.947327 final value 94.485769 converged Fitting Repeat 2 # weights: 103 initial value 103.162577 iter 10 value 94.485974 final value 94.484304 converged Fitting Repeat 3 # weights: 103 initial value 95.195003 final value 94.485932 converged Fitting Repeat 4 # weights: 103 initial value 101.755021 final value 94.485634 converged Fitting Repeat 5 # weights: 103 initial value 94.960053 final value 94.485589 converged Fitting Repeat 1 # weights: 305 initial value 101.454786 iter 10 value 94.031703 iter 20 value 93.970181 iter 30 value 92.802115 final value 92.721668 converged Fitting Repeat 2 # weights: 305 initial value 97.415305 iter 10 value 94.489344 iter 20 value 94.484442 iter 30 value 93.646665 iter 40 value 93.489946 final value 93.489886 converged Fitting Repeat 3 # weights: 305 initial value 103.991445 iter 10 value 94.489306 iter 20 value 94.469067 iter 30 value 90.010345 iter 40 value 87.777217 iter 50 value 87.667579 iter 60 value 85.171007 final value 85.170332 converged Fitting Repeat 4 # weights: 305 initial value 103.571640 iter 10 value 94.488830 iter 20 value 91.471089 iter 30 value 84.836629 iter 40 value 84.676484 iter 50 value 84.612701 iter 60 value 83.986481 iter 70 value 83.839866 iter 80 value 83.830846 iter 90 value 83.809930 iter 100 value 83.709012 final value 83.709012 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 101.150574 iter 10 value 94.031707 iter 20 value 93.864575 iter 30 value 80.158222 iter 40 value 77.272677 iter 50 value 77.267572 final value 77.266924 converged Fitting Repeat 1 # weights: 507 initial value 98.419590 iter 10 value 94.034493 iter 20 value 94.030833 iter 30 value 94.029207 iter 40 value 93.993141 iter 50 value 93.438615 iter 60 value 91.864604 iter 70 value 85.718024 iter 80 value 85.711839 iter 90 value 85.130261 final value 85.126724 converged Fitting Repeat 2 # weights: 507 initial value 94.211320 iter 10 value 91.816910 iter 20 value 83.450638 iter 30 value 79.479062 iter 40 value 79.290975 iter 50 value 79.285082 final value 79.280186 converged Fitting Repeat 3 # weights: 507 initial value 112.220416 iter 10 value 91.182444 iter 20 value 84.387770 iter 30 value 84.374305 iter 40 value 84.370936 iter 50 value 84.370494 iter 60 value 84.366817 iter 70 value 83.693862 iter 80 value 80.571439 iter 90 value 79.118784 iter 100 value 79.112232 final value 79.112232 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 107.182488 iter 10 value 93.698814 iter 20 value 81.279245 iter 30 value 80.326957 iter 40 value 80.313339 iter 50 value 80.307775 iter 60 value 80.305423 iter 70 value 80.304497 iter 80 value 80.296242 iter 90 value 78.862729 iter 100 value 77.646969 final value 77.646969 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 98.550807 iter 10 value 94.492022 iter 20 value 94.480568 iter 30 value 82.165399 iter 40 value 81.735600 iter 50 value 81.688391 iter 60 value 81.644833 iter 70 value 80.536033 iter 80 value 79.933278 iter 90 value 79.763590 iter 100 value 79.695450 final value 79.695450 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 148.447372 iter 10 value 119.268203 iter 20 value 117.843267 iter 30 value 117.024999 iter 40 value 110.813039 iter 50 value 107.958077 iter 60 value 107.246605 iter 70 value 106.588795 iter 80 value 105.653895 iter 90 value 105.185629 iter 100 value 104.293516 final value 104.293516 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 131.340035 iter 10 value 117.912328 iter 20 value 115.417361 iter 30 value 107.580412 iter 40 value 104.964036 iter 50 value 104.176702 iter 60 value 103.791452 iter 70 value 103.700382 iter 80 value 103.564426 iter 90 value 103.309009 iter 100 value 102.875150 final value 102.875150 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 133.776550 iter 10 value 117.991096 iter 20 value 116.679158 iter 30 value 112.078970 iter 40 value 104.137550 iter 50 value 103.439202 iter 60 value 102.751112 iter 70 value 101.889350 iter 80 value 101.107593 iter 90 value 100.646994 iter 100 value 100.550587 final value 100.550587 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 136.813946 iter 10 value 119.764758 iter 20 value 116.677771 iter 30 value 108.206943 iter 40 value 103.216272 iter 50 value 102.680723 iter 60 value 102.353261 iter 70 value 101.590541 iter 80 value 101.442909 iter 90 value 101.369858 iter 100 value 101.200979 final value 101.200979 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 139.776466 iter 10 value 118.363098 iter 20 value 108.423533 iter 30 value 107.441982 iter 40 value 106.241982 iter 50 value 103.715930 iter 60 value 102.973111 iter 70 value 102.835014 iter 80 value 102.280502 iter 90 value 102.000706 iter 100 value 101.879462 final value 101.879462 stopped after 100 iterations svmRadial ranger Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases RUNIT TEST PROTOCOL -- Thu Jun 27 20:56:03 2024 *********************************************** Number of test functions: 7 Number of errors: 0 Number of failures: 0 1 Test Suite : HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures Number of test functions: 7 Number of errors: 0 Number of failures: 0 Warning messages: 1: `repeats` has no meaning for this resampling method. 2: executing %dopar% sequentially: no parallel backend registered > > > > > proc.time() user system elapsed 42.063 1.957 43.591
HPiP.Rcheck/HPiP-Ex.timings
name | user | system | elapsed | |
FSmethod | 34.250 | 1.622 | 36.137 | |
FreqInteractors | 0.264 | 0.013 | 0.278 | |
calculateAAC | 0.043 | 0.007 | 0.051 | |
calculateAutocor | 0.397 | 0.068 | 0.471 | |
calculateCTDC | 0.084 | 0.005 | 0.090 | |
calculateCTDD | 0.709 | 0.026 | 0.743 | |
calculateCTDT | 0.241 | 0.010 | 0.254 | |
calculateCTriad | 0.419 | 0.030 | 0.454 | |
calculateDC | 0.095 | 0.012 | 0.107 | |
calculateF | 0.389 | 0.014 | 0.405 | |
calculateKSAAP | 0.108 | 0.013 | 0.121 | |
calculateQD_Sm | 1.753 | 0.111 | 1.878 | |
calculateTC | 2.286 | 0.239 | 2.543 | |
calculateTC_Sm | 0.233 | 0.012 | 0.246 | |
corr_plot | 34.048 | 1.635 | 35.913 | |
enrichfindP | 0.491 | 0.063 | 8.991 | |
enrichfind_hp | 0.082 | 0.022 | 1.096 | |
enrichplot | 0.404 | 0.009 | 0.414 | |
filter_missing_values | 0.001 | 0.001 | 0.002 | |
getFASTA | 0.070 | 0.012 | 3.278 | |
getHPI | 0.000 | 0.000 | 0.002 | |
get_negativePPI | 0.002 | 0.000 | 0.002 | |
get_positivePPI | 0.000 | 0.000 | 0.001 | |
impute_missing_data | 0.001 | 0.000 | 0.002 | |
plotPPI | 0.082 | 0.002 | 0.085 | |
pred_ensembel | 14.289 | 0.562 | 10.762 | |
var_imp | 35.841 | 1.747 | 37.881 | |