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This page was generated on 2024-07-16 11:40 -0400 (Tue, 16 Jul 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4677
palomino6Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4416
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4444
kjohnson3macOS 13.6.5 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4393
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4373
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 797/2243HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GENIE3 1.27.0  (landing page)
Van Anh Huynh-Thu
Snapshot Date: 2024-07-15 14:00 -0400 (Mon, 15 Jul 2024)
git_url: https://git.bioconductor.org/packages/GENIE3
git_branch: devel
git_last_commit: a693965
git_last_commit_date: 2024-04-30 10:59:28 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino6Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.6.5 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  


INSTALL results for GENIE3 on palomino6

To the developers/maintainers of the GENIE3 package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GENIE3.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: GENIE3
Version: 1.27.0
Command: C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL GENIE3
StartedAt: 2024-07-15 15:20:10 -0400 (Mon, 15 Jul 2024)
EndedAt: 2024-07-15 15:20:18 -0400 (Mon, 15 Jul 2024)
EllapsedTime: 8.4 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL GENIE3
###
##############################################################################
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* installing to library 'C:/Users/biocbuild/bbs-3.20-bioc/R/library'
* installing *source* package 'GENIE3' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
gcc  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c GENIE3.c -o GENIE3.o
GENIE3.c: In function 'find_the_best_threshold_multiregr':
GENIE3.c:1370:27: warning: 'best_info' may be used uninitialized [-Wmaybe-uninitialized]
 1370 |     current_threshold_info=best_info;
      |     ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
GENIE3.c:1328:31: note: 'best_info' was declared here
 1328 |   SCORE_TYPE best_score=-1.0, best_info, current_score, w;
      |                               ^~~~~~~~~
GENIE3.c:1368:24: warning: 'best_threshold' may be used uninitialized [-Wmaybe-uninitialized]
 1368 |     current_threshold.f=best_threshold;
      |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
GENIE3.c:1329:9: note: 'best_threshold' was declared here
 1329 |   float best_threshold;
      |         ^~~~~~~~~~~~~~
GENIE3.c: In function 'build_one_tree_ensemble':
GENIE3.c:1052:7: warning: 'fp' may be used uninitialized [-Wmaybe-uninitialized]
 1052 |       write_one_tree(current_tree, fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GENIE3.c:987:9: note: 'fp' was declared here
  987 |   FILE *fp;
      |         ^~
GENIE3.c: In function 'find_the_best_threshold_symb_multiregr':
GENIE3.c:1466:27: warning: 'best_info' may be used uninitialized [-Wmaybe-uninitialized]
 1466 |     current_threshold_info=best_info;
      |     ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
GENIE3.c:1412:31: note: 'best_info' was declared here
 1412 |   SCORE_TYPE best_score=-1.0, best_info, current_score;
      |                               ^~~~~~~~~
GENIE3.c: In function 'compute_ltrees_variable_importance_multiregr_separate':
GENIE3.c:1753:6: warning: 'flag_continue' may be used uninitialized [-Wmaybe-uninitialized]
 1753 |   if (flag_continue == 1) {
      |      ^
GENIE3.c:1725:7: note: 'flag_continue' was declared here
 1725 |   int flag_continue;
      |       ^~~~~~~~~~~~~
gcc -shared -s -static-libgcc -o GENIE3.dll tmp.def GENIE3.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LC:/Users/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.20-bioc/R/library/00LOCK-GENIE3/00new/GENIE3/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
in method for 'GENIE3' with signature '"SummarizedExperiment"': no definition for class "SummarizedExperiment"
in method for 'GENIE3' with signature '"ExpressionSet"': no definition for class "ExpressionSet"
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GENIE3)