Multiple platform build/check report for BioC 3.20 - BUILD results for ELMER on palomino6

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup"	4693
palomino6	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4089
lconway	macOS 12.7.1 Monterey	x86_64	4.4.1 RC (2024-06-06 r86719) -- "Race for Your Life"	4407
kjohnson3	macOS 13.6.5 Ventura	arm64	4.4.1 RC (2024-06-06 r86719) -- "Race for Your Life"	4356
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for ELMER on palomino6

To the developers/maintainers of the ELMER package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ELMER.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: ELMER

Version: 2.29.0

Command: chmod a+r ELMER -R && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ELMER

StartedAt: 2024-06-28 01:31:10 -0400 (Fri, 28 Jun 2024)

EndedAt: 2024-06-28 01:32:02 -0400 (Fri, 28 Jun 2024)

EllapsedTime: 51.7 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r ELMER -R && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ELMER
###
##############################################################################
##############################################################################


* checking for file 'ELMER/DESCRIPTION' ... OK
* preparing 'ELMER':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'analysis_data_input.Rmd' using rmarkdown
Error: processing vignette 'analysis_data_input.Rmd' failed with diagnostics:
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
--- failed re-building 'analysis_data_input.Rmd'

--- re-building 'analysis_diff_meth.Rmd' using rmarkdown
Error: processing vignette 'analysis_diff_meth.Rmd' failed with diagnostics:
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
--- failed re-building 'analysis_diff_meth.Rmd'

--- re-building 'analysis_get_pair.Rmd' using rmarkdown
Error: processing vignette 'analysis_get_pair.Rmd' failed with diagnostics:
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
--- failed re-building 'analysis_get_pair.Rmd'

--- re-building 'analysis_gui.Rmd' using rmarkdown
Error: processing vignette 'analysis_gui.Rmd' failed with diagnostics:
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
--- failed re-building 'analysis_gui.Rmd'

--- re-building 'analysis_motif_enrichment.Rmd' using rmarkdown
Error: processing vignette 'analysis_motif_enrichment.Rmd' failed with diagnostics:
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
--- failed re-building 'analysis_motif_enrichment.Rmd'

--- re-building 'analysis_regulatory_tf.Rmd' using rmarkdown
Error: processing vignette 'analysis_regulatory_tf.Rmd' failed with diagnostics:
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
--- failed re-building 'analysis_regulatory_tf.Rmd'

--- re-building 'index.Rmd' using rmarkdown
Error: processing vignette 'index.Rmd' failed with diagnostics:
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
--- failed re-building 'index.Rmd'

--- re-building 'input.Rmd' using rmarkdown
Error: processing vignette 'input.Rmd' failed with diagnostics:
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
--- failed re-building 'input.Rmd'

--- re-building 'pipe.Rmd' using rmarkdown
Error: processing vignette 'pipe.Rmd' failed with diagnostics:
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
--- failed re-building 'pipe.Rmd'

--- re-building 'plots_TF.Rmd' using rmarkdown
Error: processing vignette 'plots_TF.Rmd' failed with diagnostics:
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
--- failed re-building 'plots_TF.Rmd'

--- re-building 'plots_heatmap.Rmd' using rmarkdown
Error: processing vignette 'plots_heatmap.Rmd' failed with diagnostics:
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
--- failed re-building 'plots_heatmap.Rmd'

--- re-building 'plots_motif_enrichment.Rmd' using rmarkdown
Error: processing vignette 'plots_motif_enrichment.Rmd' failed with diagnostics:
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
--- failed re-building 'plots_motif_enrichment.Rmd'

--- re-building 'plots_scatter.Rmd' using rmarkdown
Error: processing vignette 'plots_scatter.Rmd' failed with diagnostics:
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
--- failed re-building 'plots_scatter.Rmd'

--- re-building 'plots_schematic.Rmd' using rmarkdown
Error: processing vignette 'plots_schematic.Rmd' failed with diagnostics:
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
--- failed re-building 'plots_schematic.Rmd'

--- re-building 'usecase.Rmd' using rmarkdown
Error: processing vignette 'usecase.Rmd' failed with diagnostics:
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
--- failed re-building 'usecase.Rmd'

SUMMARY: processing the following files failed:
  'analysis_data_input.Rmd' 'analysis_diff_meth.Rmd'
  'analysis_get_pair.Rmd' 'analysis_gui.Rmd'
  'analysis_motif_enrichment.Rmd' 'analysis_regulatory_tf.Rmd'
  'index.Rmd' 'input.Rmd' 'pipe.Rmd' 'plots_TF.Rmd' 'plots_heatmap.Rmd'
  'plots_motif_enrichment.Rmd' 'plots_scatter.Rmd'
  'plots_schematic.Rmd' 'usecase.Rmd'

Error: Vignette re-building failed.
Execution halted