Multiple platform build/check report for BioC 3.20 - BUILD results for DelayedArray on palomino6

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup"	4693
palomino6	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4089
lconway	macOS 12.7.1 Monterey	x86_64	4.4.1 RC (2024-06-06 r86719) -- "Race for Your Life"	4407
kjohnson3	macOS 13.6.5 Ventura	arm64	4.4.1 RC (2024-06-06 r86719) -- "Race for Your Life"	4356
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for DelayedArray on palomino6

To the developers/maintainers of the DelayedArray package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DelayedArray.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: DelayedArray

Version: 0.31.3

Command: chmod a+r DelayedArray -R && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data DelayedArray

StartedAt: 2024-06-28 01:27:23 -0400 (Fri, 28 Jun 2024)

EndedAt: 2024-06-28 01:28:05 -0400 (Fri, 28 Jun 2024)

EllapsedTime: 41.9 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r DelayedArray -R && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data DelayedArray
###
##############################################################################
##############################################################################


* checking for file 'DelayedArray/DESCRIPTION' ... OK
* preparing 'DelayedArray':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'B-Implementing_a_backend.Rmd' using rmarkdown
Error: processing vignette 'B-Implementing_a_backend.Rmd' failed with diagnostics:
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
--- failed re-building 'B-Implementing_a_backend.Rmd'

--- re-building 'A-Working_with_large_arrays.Rnw' using knitr

Quitting from lines 44-55 [setup] (A-Working_with_large_arrays.Rnw)
Error: processing vignette 'A-Working_with_large_arrays.Rnw' failed with diagnostics:
there is no package called 'HDF5Array'
--- failed re-building 'A-Working_with_large_arrays.Rnw'

--- re-building 'C-DelayedArray_HDF5Array_update.Rnw' using knitr

Quitting from lines 42-49 [setup] (C-DelayedArray_HDF5Array_update.Rnw)
Error: processing vignette 'C-DelayedArray_HDF5Array_update.Rnw' failed with diagnostics:
there is no package called 'HDF5Array'
--- failed re-building 'C-DelayedArray_HDF5Array_update.Rnw'

SUMMARY: processing the following files failed:
  'B-Implementing_a_backend.Rmd' 'A-Working_with_large_arrays.Rnw'
  'C-DelayedArray_HDF5Array_update.Rnw'

Error: Vignette re-building failed.
Execution halted