Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-06-28 11:37 -0400 (Fri, 28 Jun 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4693 |
palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4089 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 RC (2024-06-06 r86719) -- "Race for Your Life" | 4407 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 RC (2024-06-06 r86719) -- "Race for Your Life" | 4356 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 516/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
DeepTarget 0.99.19 (landing page) Trinh Nguyen
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino6 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | see weekly results here | ||||||||||||
To the developers/maintainers of the DeepTarget package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DeepTarget.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: DeepTarget |
Version: 0.99.19 |
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:DeepTarget.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings DeepTarget_0.99.19.tar.gz |
StartedAt: 2024-06-27 22:22:31 -0400 (Thu, 27 Jun 2024) |
EndedAt: 2024-06-27 22:26:54 -0400 (Thu, 27 Jun 2024) |
EllapsedTime: 262.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: DeepTarget.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:DeepTarget.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings DeepTarget_0.99.19.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/DeepTarget.Rcheck’ * using R version 4.4.0 RC (2024-04-16 r86468) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * checking for file ‘DeepTarget/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘DeepTarget’ version ‘0.99.19’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘DeepTarget’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE Depmap2DeepTarget: no visible binding for global variable ‘dataset_id’ Depmap2DeepTarget: no visible binding for global variable ‘name’ Undefined global functions or variables: dataset_id name * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed Depmap2DeepTarget 65.815 52.537 87.827 plotSim 3.054 2.071 1.903 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.20-bioc/meat/DeepTarget.Rcheck/00check.log’ for details.
DeepTarget.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL DeepTarget ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘DeepTarget’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DeepTarget)
DeepTarget.Rcheck/DeepTarget-Ex.timings
name | user | system | elapsed | |
DMB | 2.676 | 0.496 | 2.872 | |
DTR | 0.983 | 0.739 | 1.232 | |
Depmap2DeepTarget | 65.815 | 52.537 | 87.827 | |
DoInteractExp | 0.809 | 0.651 | 0.740 | |
DoInteractMutant | 0.849 | 0.824 | 0.766 | |
DoPWY | 1.295 | 1.773 | 1.358 | |
OntargetM | 0.366 | 0.363 | 0.183 | |
PredMaxSim | 0.306 | 0.243 | 0.600 | |
PredTarget | 2.590 | 1.960 | 1.858 | |
computeCor | 0.381 | 0.442 | 1.696 | |
plotCor | 2.370 | 1.812 | 0.793 | |
plotSim | 3.054 | 2.071 | 1.903 | |