Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-06-11 15:42 -0400 (Tue, 11 Jun 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4679 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" | 4414 |
merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4441 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4394 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 506/2239 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
DECIPHER 3.1.2 (landing page) Erik Wright
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 12.7.4 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
To the developers/maintainers of the DECIPHER package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DECIPHER.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: DECIPHER |
Version: 3.1.2 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:DECIPHER.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings DECIPHER_3.1.2.tar.gz |
StartedAt: 2024-06-10 17:04:53 -0400 (Mon, 10 Jun 2024) |
EndedAt: 2024-06-10 17:26:16 -0400 (Mon, 10 Jun 2024) |
EllapsedTime: 1282.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: DECIPHER.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:DECIPHER.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings DECIPHER_3.1.2.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/DECIPHER.Rcheck’ * using R version 4.4.0 Patched (2024-04-24 r86482) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘DECIPHER/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘DECIPHER’ version ‘3.1.2’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘DECIPHER’ can be installed ... OK * used C compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’ * used SDK: ‘MacOSX11.3.sdk’ * checking installed package size ... NOTE installed size is 12.4Mb sub-directories of 1Mb or more: R 1.5Mb data 7.5Mb extdata 2.5Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE AlignSeqs: no visible binding for global variable ‘deltaGrulesRNA’ DesignSignatures: no visible binding for global variable ‘deltaHrules’ FindGenes: no visible binding for global variable ‘deltaHrulesRNA’ FindNonCoding: no visible binding for global variable ‘deltaHrulesRNA’ LearnNonCoding: no visible binding for global variable ‘deltaHrulesRNA’ PredictDBN: no visible binding for global variable ‘deltaGrulesRNA’ TreeLine: multiple local function definitions for ‘.minimize’ with different formal arguments Undefined global functions or variables: deltaGrulesRNA deltaHrules deltaHrulesRNA * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking compiled code ... NOTE Note: information on .o files is not available * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed AlignSeqs 206.330 4.980 228.994 LearnNonCoding 182.607 5.683 191.681 FindNonCoding 125.757 8.695 135.202 MapCharacters 76.554 0.569 77.656 WriteGenes 58.237 2.056 60.595 ExtractGenes 58.008 1.873 61.120 Genes-class 56.904 1.933 59.134 FindGenes 53.342 1.684 55.576 BrowseSeqs 40.338 0.486 41.223 DetectRepeats 28.414 0.324 29.412 CorrectFrameshifts 20.921 2.201 23.345 AlignTranslation 15.831 0.223 16.233 StaggerAlignment 14.024 0.848 14.953 Taxa-class 13.855 0.497 14.402 IdTaxa 13.152 0.583 13.836 LearnTaxa 9.586 1.802 11.649 TreeLine 10.206 0.215 10.485 ScoreAlignment 6.951 0.236 7.235 Array2Matrix 6.833 0.058 6.930 DesignArray 6.717 0.050 6.889 Clusterize 5.942 0.443 6.471 AlignPairs 5.157 0.106 5.411 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/Users/biocbuild/bbs-3.20-bioc/meat/DECIPHER.Rcheck/00check.log’ for details.
DECIPHER.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL DECIPHER ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘DECIPHER’ ... ** using staged installation ** libs using C compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’ using SDK: ‘MacOSX11.3.sdk’ clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c AlignProfiles.c -o AlignProfiles.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c AssignIndels.c -o AssignIndels.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Biostrings_stubs.c -o Biostrings_stubs.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c CalculateDeltaG.c -o CalculateDeltaG.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c CalculateFISH.c -o CalculateFISH.o CalculateFISH.c:26:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -11.5, -7.8, -7, -8.3, ^~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:27:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -10.4, -12.8, -16.3, -9.1, ^~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:28:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -8.6, -8, -9.3, -5.9, ^~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:29:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -7.8, -5.5, -9, -7.8 ^~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:32:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -36.4, -21.6, -19.7, -23.9, ^~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:33:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -28.4, -31.9, -47.1, -23.5, ^~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:34:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -22.9, -17.1, -23.2, -12.3, ^~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:35:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -23.2, -13.5, -26.1, -21.9 ^~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:38:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -7.9, -8.4, -7.8, -7.2, ^~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:39:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -8.5, -8, -10.6, -7.8, ^~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:40:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -8.2, -9.8, -8, -8.4, ^~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:41:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -7.2, -8.2, -8.5, -7.9 ^~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:44:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -22.2, -22.4, -21, -20.4, ^~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:45:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -22.7, -19.9, -27.2, -21, ^~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:46:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -22.2, -24.4, -19.9, -22.4, ^~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:47:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -21.3, -22.2, -22.7, -22.2 ^~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:50:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -6.6, -10.17, -7.65, -5.76, ^~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:51:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -10.56, -12.21, -7.95, -7.65, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:52:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -13.37, -14.21, -12.21, -10.17, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:53:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -8.11, -13.37, -10.56, -6.6 ^~~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:56:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -18.38, -26.03, -19.18, -15.67, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:57:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -28.25, -30.02, -19.18, -19.18, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:58:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -35.68, -34.85, -30.02, -26.03, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:59:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -22.59, -35.68, -28.25, -18.38 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } 24 warnings generated. clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ChainSegments.c -o ChainSegments.o ChainSegments.c:714:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 1 warning generated. clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Cluster.c -o Cluster.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ClusterML.c -o ClusterML.o ClusterML.c:1143:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 1 warning generated. clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ClusterMP.c -o ClusterMP.o ClusterMP.c:109:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 1 warning generated. clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Compositions.c -o Compositions.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Compression.c -o Compression.o Compression.c:520:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ Compression.c:1407:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ Compression.c:1705:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 3 warnings generated. clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ConsensusSequence.c -o ConsensusSequence.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c DesignProbes.c -o DesignProbes.o DesignProbes.c:71:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -0.816507461,-2.5401714,-1.647430026,-1.184658548 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:72:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-1.854740485,-2.479102613,-2.826248182,-1.647430026 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:73:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-2.48761723,-4.694133177,-2.479102613,-2.5401714 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:74:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-0.495794417,-2.48761723,-1.854740485,-0.816507461 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:78:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -0.141370102,-0.439805276,-0.285236035,-0.205111781 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:79:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-0.321129768,-0.429231826,-0.48933661,-0.285236035 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:80:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-0.430706047,-0.812742218,-0.429231826,-0.439805276 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:81:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-0.085841845,-0.430706047,-0.321129768,-0.141370102 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:85:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] 0,0,0,0 ^~~~~~~ { } DesignProbes.c:86:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.545032445,1.254355018,1.491691514,1.329138183 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:87:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.150635633,0.582415494,1.075877275,1.187937642 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:88:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.203555051,1.001540513,0.864287715,0.717125848 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:89:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.75,0.65,0.69,0.78 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:85:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] 0,0,0,0 ^~~~~~~ { DesignProbes.c:90:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.630005348,0.18553379,0.730763505,0.709272397 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:91:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:92:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.856582783,-0.143236405,0.716721488,0.603652831 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:93:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.851622883,0.653168672,0.676545316,1.187937642 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:94:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.75,0.65,0.69,0.78 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:90:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.630005348,0.18553379,0.730763505,0.709272397 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:95:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.231861002,0.746214538,1.087821916,0.989140748 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:96:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.822113278,1.270687029,1.336192565,1.364584949 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:97:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:98:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.443665704,1.385046493,1.256013166,1.329138183 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:99:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.75,0.65,0.69,0.78 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:95:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.231861002,0.746214538,1.087821916,0.989140748 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:100:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.478009492,0.882097231,1.20450984,1.061002478 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:101:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.496720812,0.846496194,0.967868114,0.989140748 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:102:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.766581547,-0.024857805,0.50754303,0.709272397 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:103:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:104:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.75,0.65,0.69,0.78 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:100:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.478009492,0.882097231,1.20450984,1.061002478 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:105:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.75,0.65,0.69,0.78 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:106:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.75,0.65,0.69,0.78 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:107:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.75,0.65,0.69,0.78 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:108:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.76,0.65,0.69,0.78 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:109:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:105:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.75,0.65,0.69,0.78 ^~~~~~~~~~~~~~~~~~~ { DesignProbes.c:85:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] 0,0,0,0 ^~~~~~~ { DesignProbes.c:110:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:111:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.295827995,0.84547091,0.91019099,1.256013166 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:112:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.755889609,0.241428373,0.396379912,0.676545316 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:113:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.99945386,0.740323132,0.435659206,0.864287715 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:114:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.65,0.55,0.48,0.69 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:110:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { DesignProbes.c:115:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.843147406,0.101248351,0.49063599,0.50754303 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:116:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:117:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.0651638,0.249934344,0.699352949,0.716721488 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:118:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.871921533,0.59458138,0.396379912,1.075877275 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:119:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.65,0.56,0.49,0.69 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:115:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.843147406,0.101248351,0.49063599,0.50754303 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:120:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.07531714,0.318907854,0.653287717,0.967868114 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:121:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.099899195,0.730184613,0.661798984,1.336192565 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:122:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:123:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.45897431,1.318532145,0.91019099,1.491691514 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:124:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.65,0.56,0.49,0.69 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:120:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.07531714,0.318907854,0.653287717,0.967868114 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:125:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.242135174,0.894838095,1.108555445,1.20450984 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:126:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.911428974,0.524430101,0.653287717,1.087821916 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:127:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.503209827,0.274849491,0.49063599,0.730763505 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:128:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:129:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.65,0.55,0.48,0.69 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:125:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.242135174,0.894838095,1.108555445,1.20450984 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:130:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.65,0.55,0.48,0.69 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:131:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.65,0.56,0.49,0.69 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:132:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.65,0.56,0.49,0.69 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:133:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.65,0.55,0.48,0.69 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:134:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:130:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.65,0.55,0.48,0.69 ^~~~~~~~~~~~~~~~~~~ { DesignProbes.c:110:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { DesignProbes.c:135:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:136:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.100661785,0.969784756,1.318532145,1.385046493 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:137:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.565895968,-0.060347902,0.59458138,0.653168672 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:138:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.782168488,0.788161238,0.740323132,1.001540513 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:139:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.68,0.46,0.55,0.65 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:135:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { DesignProbes.c:140:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.468913405,-0.469855984,0.274849491,-0.024857805 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:141:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:142:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.258195131,-0.70438632,0.249934344,-0.143236405 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:143:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.502914193,-0.060347902,0.241428373,0.582415494 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:144:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.68,0.47,0.56,0.65 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:140:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.468913405,-0.469855984,0.274849491,-0.024857805 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:145:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.584083861,0.258975454,0.524430101,0.846496194 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:146:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.968040559,0.797499702,0.730184613,1.270687029 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:147:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:148:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.081040749,0.969784756,0.84547091,1.254355018 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:149:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.68,0.47,0.56,0.65 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:145:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.584083861,0.258975454,0.524430101,0.846496194 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:150:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.048553951,0.728354541,0.894838095,0.882097231 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:151:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.88611252,0.258975454,0.318907854,0.746214538 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:152:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.239520858,-0.469855984,0.101248351,0.18553379 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:153:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:154:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.68,0.46,0.55,0.65 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:150:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.048553951,0.728354541,0.894838095,0.882097231 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:155:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.68,0.46,0.55,0.65 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:156:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.68,0.47,0.56,0.65 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:157:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.68,0.47,0.56,0.65 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:158:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.68,0.46,0.55,0.65 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:159:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:155:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.68,0.46,0.55,0.65 ^~~~~~~~~~~~~~~~~~~ { DesignProbes.c:135:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { DesignProbes.c:160:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:161:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.566899704,1.081040749,1.45897431,1.443665704 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:162:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.976725675,0.502914193,0.871921533,0.851622883 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:163:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.482046826,0.782168488,0.99945386,1.203555051 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:164:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.85,0.68,0.65,0.76 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:160:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { DesignProbes.c:165:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.798628781,0.239520858,0.503209827,0.766581547 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:166:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:167:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.141098246,0.258195131,1.0651638,0.856582783 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:168:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.976725675,0.565895968,0.755889609,1.150635633 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:169:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.85,0.68,0.65,0.75 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:165:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.798628781,0.239520858,0.503209827,0.766581547 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:170:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.125403302,0.88611252,0.911428974,1.496720812 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:171:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.68169282,0.968040559,1.099899195,1.822113278 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:172:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:173:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.566899704,1.100661785,1.295827995,1.545032445 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:174:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.85,0.68,0.65,0.75 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:170:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.125403302,0.88611252,0.911428974,1.496720812 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:175:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.35948517,1.048553951,1.242135174,1.478009492 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:176:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.125403302,0.584083861,1.07531714,1.231861002 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:177:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.798628781,0.468913405,0.843147406,0.630005348 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:178:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:179:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.85,0.68,0.65,0.75 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:175:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.35948517,1.048553951,1.242135174,1.478009492 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:180:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.85,0.68,0.65,0.75 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:181:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.85,0.68,0.65,0.75 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:182:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.85,0.68,0.65,0.75 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:183:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.85,0.68,0.65,0.75 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:184:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:180:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.85,0.68,0.65,0.75 ^~~~~~~~~~~~~~~~~~~ { DesignProbes.c:160:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { DesignProbes.c:58:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 133 warnings generated. clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Diff.c -o Diff.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c DistanceMatrix.c -o DistanceMatrix.o DistanceMatrix.c:319:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ DistanceMatrix.c:905:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 2 warnings generated. clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c EnumerateSequence.c -o EnumerateSequence.o EnumerateSequence.c:297:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ EnumerateSequence.c:870:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 2 warnings generated. clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ExpandAmbiguities.c -o ExpandAmbiguities.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c FindFrameshifts.c -o FindFrameshifts.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c GeneFinding.c -o GeneFinding.o GeneFinding.c:3260:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ GeneFinding.c:3337:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ GeneFinding.c:3394:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 3 warnings generated. clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c GetPools.c -o GetPools.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Import.c -o Import.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c InformationContent.c -o InformationContent.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c IntDist.c -o IntDist.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ManipulateXStringSet.c -o ManipulateXStringSet.o ManipulateXStringSet.c:54:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ ManipulateXStringSet.c:688:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ ManipulateXStringSet.c:813:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 3 warnings generated. clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c MeltPolymer.c -o MeltPolymer.o MeltPolymer.c:80:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -7.9,-8.4,-7.8,-7.2 ^~~~~~~~~~~~~~~~~~~ { } MeltPolymer.c:81:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-8.5,-8.0,-10.6,-7.8 ^~~~~~~~~~~~~~~~~~~~ { } MeltPolymer.c:82:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-8.2,-9.8,-8.0,-8.4 ^~~~~~~~~~~~~~~~~~~ { } MeltPolymer.c:83:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-7.2,-8.2,-8.5,-7.9 ^~~~~~~~~~~~~~~~~~~ { } MeltPolymer.c:89:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -22.2,-22.4,-21.0,-20.4 ^~~~~~~~~~~~~~~~~~~~~~~ { } MeltPolymer.c:90:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-22.7,-19.9,-27.2,-21.0 ^~~~~~~~~~~~~~~~~~~~~~~ { } MeltPolymer.c:91:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-22.2,-24.4,-19.9,-22.4 ^~~~~~~~~~~~~~~~~~~~~~~ { } MeltPolymer.c:92:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-21.3,-22.2,-22.7,-22.2 ^~~~~~~~~~~~~~~~~~~~~~~ { } 8 warnings generated. clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c MovingAverage.c -o MovingAverage.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c NNLS.c -o NNLS.o NNLS.c:49:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 1 warning generated. clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Order.c -o Order.o Order.c:45:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 1 warning generated. clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c PairwiseAlignment.c -o PairwiseAlignment.o PairwiseAlignment.c:187:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ PairwiseAlignment.c:1033:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 2 warnings generated. clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c PredictDBN.c -o PredictDBN.o PredictDBN.c:159:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 1 warning generated. clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c PredictHEC.c -o PredictHEC.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c R_init_decipher.c -o R_init_decipher.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c S4Vectors_stubs.c -o S4Vectors_stubs.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Search.c -o Search.o Search.c:99:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 1 warning generated. clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c TerminalMismatch.c -o TerminalMismatch.o TerminalMismatch.c:40:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 1 warning generated. clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Translate.c -o Translate.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Utils.c -o Utils.o Utils.c:222:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ Utils.c:335:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 2 warnings generated. clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c VectorSums.c -o VectorSums.o VectorSums.c:82:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 1 warning generated. clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c XVector_stubs.c -o XVector_stubs.o clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o DECIPHER.so AlignProfiles.o AssignIndels.o Biostrings_stubs.o CalculateDeltaG.o CalculateFISH.o ChainSegments.o Cluster.o ClusterML.o ClusterMP.o Compositions.o Compression.o ConsensusSequence.o DesignProbes.o Diff.o DistanceMatrix.o EnumerateSequence.o ExpandAmbiguities.o FindFrameshifts.o GeneFinding.o GetPools.o Import.o InformationContent.o IntDist.o ManipulateXStringSet.o MeltPolymer.o MovingAverage.o NNLS.o Order.o PairwiseAlignment.o PredictDBN.o PredictHEC.o R_init_decipher.o S4Vectors_stubs.o Search.o TerminalMismatch.o Translate.o Utils.o VectorSums.o XVector_stubs.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-DECIPHER/00new/DECIPHER/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DECIPHER)
DECIPHER.Rcheck/DECIPHER-Ex.timings
name | user | system | elapsed | |
AA_REDUCED | 0.039 | 0.006 | 0.046 | |
Add2DB | 0.783 | 0.076 | 0.903 | |
AdjustAlignment | 0.254 | 0.010 | 0.270 | |
AlignDB | 1.522 | 0.036 | 1.602 | |
AlignPairs | 5.157 | 0.106 | 5.411 | |
AlignProfiles | 1.432 | 0.039 | 1.510 | |
AlignSeqs | 206.330 | 4.980 | 228.994 | |
AlignSynteny | 3.001 | 0.051 | 3.139 | |
AlignTranslation | 15.831 | 0.223 | 16.233 | |
AmplifyDNA | 0.004 | 0.003 | 0.008 | |
Array2Matrix | 6.833 | 0.058 | 6.930 | |
BLOSUM | 0.023 | 0.007 | 0.029 | |
BrowseDB | 0.044 | 0.004 | 0.050 | |
BrowseSeqs | 40.338 | 0.486 | 41.223 | |
CalculateEfficiencyArray | 0.027 | 0.008 | 0.035 | |
CalculateEfficiencyFISH | 0.005 | 0.000 | 0.005 | |
CalculateEfficiencyPCR | 0.003 | 0.000 | 0.004 | |
Clusterize | 5.942 | 0.443 | 6.471 | |
Codec | 1.587 | 0.025 | 1.625 | |
ConsensusSequence | 0.205 | 0.008 | 0.214 | |
Cophenetic | 0.205 | 0.005 | 0.211 | |
CorrectFrameshifts | 20.921 | 2.201 | 23.345 | |
CreateChimeras | 0.582 | 0.009 | 0.711 | |
DB2Seqs | 0.040 | 0.020 | 0.099 | |
DesignArray | 6.717 | 0.050 | 6.889 | |
DesignPrimers | 0.011 | 0.001 | 0.013 | |
DesignProbes | 0.013 | 0.001 | 0.015 | |
DesignSignatures | 0.012 | 0.001 | 0.013 | |
DetectRepeats | 28.414 | 0.324 | 29.412 | |
DigestDNA | 0.157 | 0.009 | 0.168 | |
Disambiguate | 0.046 | 0.003 | 0.048 | |
DistanceMatrix | 0.049 | 0.007 | 0.056 | |
ExtractGenes | 58.008 | 1.873 | 61.120 | |
FindChimeras | 0.060 | 0.003 | 0.065 | |
FindGenes | 53.342 | 1.684 | 55.576 | |
FindNonCoding | 125.757 | 8.695 | 135.202 | |
FindSynteny | 1.750 | 0.047 | 1.802 | |
FormGroups | 0.056 | 0.004 | 0.061 | |
Genes-class | 56.904 | 1.933 | 59.134 | |
HEC_MI | 0.406 | 0.022 | 0.430 | |
IdConsensus | 0.470 | 0.044 | 0.517 | |
IdLengths | 0.044 | 0.003 | 0.047 | |
IdTaxa | 13.152 | 0.583 | 13.836 | |
IdentifyByRank | 0.036 | 0.006 | 0.043 | |
IndexSeqs | 1.390 | 0.013 | 1.407 | |
InvertedIndex-class | 0.728 | 0.013 | 0.741 | |
LearnNonCoding | 182.607 | 5.683 | 191.681 | |
LearnTaxa | 9.586 | 1.802 | 11.649 | |
MIQS | 0.070 | 0.012 | 0.083 | |
MMLSUM | 0.008 | 0.008 | 0.017 | |
MODELS | 0.002 | 0.000 | 0.002 | |
MapCharacters | 76.554 | 0.569 | 77.656 | |
MaskAlignment | 0.676 | 0.034 | 0.712 | |
MeltDNA | 0.102 | 0.005 | 0.108 | |
NNLS | 0.003 | 0.001 | 0.004 | |
NonCoding-class | 0.080 | 0.014 | 0.093 | |
NonCodingRNA | 0.161 | 0.022 | 0.184 | |
OrientNucleotides | 0.667 | 0.010 | 0.681 | |
PAM | 0.008 | 0.006 | 0.014 | |
PFASUM | 0.012 | 0.005 | 0.017 | |
PredictDBN | 0.010 | 0.002 | 0.011 | |
PredictHEC | 0.373 | 0.011 | 0.386 | |
RESTRICTION_ENZYMES | 0.002 | 0.005 | 0.008 | |
ReadDendrogram | 0.033 | 0.003 | 0.036 | |
RemoveGaps | 0.013 | 0.001 | 0.014 | |
ScoreAlignment | 6.951 | 0.236 | 7.235 | |
SearchDB | 0.062 | 0.009 | 0.071 | |
SearchIndex | 1.424 | 0.097 | 1.528 | |
Seqs2DB | 0.122 | 0.005 | 0.128 | |
StaggerAlignment | 14.024 | 0.848 | 14.953 | |
Synteny-class | 2.311 | 0.106 | 2.432 | |
Taxa-class | 13.855 | 0.497 | 14.402 | |
TerminalChar | 0.009 | 0.001 | 0.010 | |
TileSeqs | 3.617 | 0.045 | 3.678 | |
TrainingSet_16S | 2.119 | 0.048 | 2.181 | |
TreeLine | 10.206 | 0.215 | 10.485 | |
TrimDNA | 0.115 | 0.006 | 0.120 | |
WriteDendrogram | 0.003 | 0.001 | 0.004 | |
WriteGenes | 58.237 | 2.056 | 60.595 | |
deltaGrules | 0.015 | 0.009 | 0.024 | |
deltaGrulesRNA | 0.034 | 0.009 | 0.043 | |
deltaHrules | 0.028 | 0.008 | 0.036 | |
deltaHrulesRNA | 0.027 | 0.009 | 0.035 | |
deltaSrules | 0.076 | 0.011 | 0.086 | |
deltaSrulesRNA | 0.026 | 0.011 | 0.036 | |