Charles Plessy
| Snapshot Date: 2024-07-23 14:00 -0400 (Tue, 23 Jul 2024) |
| git_url: https://git.bioconductor.org/packages/CAGEr |
| git_branch: devel |
| git_last_commit: be47c26 |
| git_last_commit_date: 2024-05-24 01:13:15 -0400 (Fri, 24 May 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-07-24 11:39 -0400 (Wed, 24 Jul 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4688 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4284 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4455 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4404 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 264/2248 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CAGEr 2.11.3 (landing page) Charles Plessy
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the CAGEr package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CAGEr.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: CAGEr |
| Version: 2.11.3 |
| Command: chmod a+r CAGEr -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CAGEr |
| StartedAt: 2024-07-23 17:17:04 -0400 (Tue, 23 Jul 2024) |
| EndedAt: 2024-07-23 17:21:49 -0400 (Tue, 23 Jul 2024) |
| EllapsedTime: 284.8 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r CAGEr -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CAGEr ### ############################################################################## ############################################################################## * checking for file 'CAGEr/DESCRIPTION' ... OK * preparing 'CAGEr': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'CAGE_Resources.Rmd' using rmarkdown --- finished re-building 'CAGE_Resources.Rmd' --- re-building 'CAGEexp.Rmd' using rmarkdown Failed with error: 'there is no package called 'DESeq2'' Quitting from lines 764-766 [unnamed-chunk-24] (CAGEexp.Rmd) Error: processing vignette 'CAGEexp.Rmd' failed with diagnostics: This function requires the "DESeq2" package; please install it. --- failed re-building 'CAGEexp.Rmd' SUMMARY: processing the following file failed: 'CAGEexp.Rmd' Error: Vignette re-building failed. Execution halted