Back to Multiple platform build/check report for BioC 3.20:   simplified   long
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2024-06-17 12:22 -0400 (Mon, 17 Jun 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" 4685
lconwaymacOS 12.7.1 Montereyx86_644.4.1 RC (2024-06-06 r86719) -- "Race for Your Life" 4400
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 183/2242HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiocOncoTK 1.25.1  (landing page)
VJ Carey
Snapshot Date: 2024-06-16 14:00 -0400 (Sun, 16 Jun 2024)
git_url: https://git.bioconductor.org/packages/BiocOncoTK
git_branch: devel
git_last_commit: 30554ea
git_last_commit_date: 2024-06-03 13:07:32 -0400 (Mon, 03 Jun 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped

BUILD results for BiocOncoTK on nebbiolo2

To the developers/maintainers of the BiocOncoTK package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiocOncoTK.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: BiocOncoTK
Version: 1.25.1
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 BiocOncoTK
StartedAt: 2024-06-16 16:23:28 -0400 (Sun, 16 Jun 2024)
EndedAt: 2024-06-16 16:24:42 -0400 (Sun, 16 Jun 2024)
EllapsedTime: 74.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 BiocOncoTK
###
##############################################################################
##############################################################################


* checking for file ‘BiocOncoTK/DESCRIPTION’ ... OK
* preparing ‘BiocOncoTK’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘BiocOncoTK.Rmd’ using rmarkdown

Quitting from lines 18-31 [setup] (BiocOncoTK.Rmd)
Error: processing vignette 'BiocOncoTK.Rmd' failed with diagnostics:
there is no package called 'restfulSE'
--- failed re-building ‘BiocOncoTK.Rmd’

--- re-building ‘curatedMSIData.Rmd’ using rmarkdown
--- finished re-building ‘curatedMSIData.Rmd’

--- re-building ‘maptcga.Rmd’ using rmarkdown
--- finished re-building ‘maptcga.Rmd’

SUMMARY: processing the following file failed:
  ‘BiocOncoTK.Rmd’

Error: Vignette re-building failed.
Execution halted