Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-07-04 11:44 -0400 (Thu, 04 Jul 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4411 |
palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4413 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4395 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4390 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4407 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 254/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
BUSpaRse 1.19.0 (landing page) Lambda Moses
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
palomino6 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | ||||||||||
To the developers/maintainers of the BUSpaRse package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BUSpaRse.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: BUSpaRse |
Version: 1.19.0 |
Command: /home/biocbuild/R/R/bin/R CMD INSTALL BUSpaRse |
StartedAt: 2024-07-03 19:33:24 -0000 (Wed, 03 Jul 2024) |
EndedAt: 2024-07-03 19:35:00 -0000 (Wed, 03 Jul 2024) |
EllapsedTime: 95.9 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL BUSpaRse ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4.0/site-library’ * installing *source* package ‘BUSpaRse’ ... ** using staged installation ** libs using C++ compiler: ‘g++ (GCC) 10.3.1’ using C++11 g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.4.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.0/site-library/RcppArmadillo/include' -I'/home/biocbuild/R/R-4.4.0/site-library/RcppProgress/include' -I'/home/biocbuild/R/R-4.4.0/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.4.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.0/site-library/RcppArmadillo/include' -I'/home/biocbuild/R/R-4.4.0/site-library/RcppProgress/include' -I'/home/biocbuild/R/R-4.4.0/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c fill_cell_gene.cpp -o fill_cell_gene.o In file included from /home/biocbuild/R/R-4.4.0/site-library/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /home/biocbuild/R/R-4.4.0/site-library/BH/include/boost/mpl/arg.hpp:25, from /home/biocbuild/R/R-4.4.0/site-library/BH/include/boost/mpl/placeholders.hpp:24, from /home/biocbuild/R/R-4.4.0/site-library/BH/include/boost/iterator/iterator_categories.hpp:16, from /home/biocbuild/R/R-4.4.0/site-library/BH/include/boost/iterator/iterator_adaptor.hpp:14, from /home/biocbuild/R/R-4.4.0/site-library/BH/include/boost/token_iterator.hpp:22, from /home/biocbuild/R/R-4.4.0/site-library/BH/include/boost/tokenizer.hpp:20, from fill_cell_gene.cpp:16: /home/biocbuild/R/R-4.4.0/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^ /home/biocbuild/R/R-4.4.0/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_<Pred>::************ | ^ g++ -std=gnu++11 -shared -L/home/biocbuild/R/R-4.4.0/lib -L/usr/local/lib -o BUSpaRse.so RcppExports.o fill_cell_gene.o -lopenblas -L/usr/lib/gcc/aarch64-linux-gnu/10.3.1 -lgfortran -lm -L/home/biocbuild/R/R-4.4.0/lib -lR installing to /home/biocbuild/R/R-4.4.0/site-library/00LOCK-BUSpaRse/00new/BUSpaRse/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BUSpaRse)