Back to Multiple platform build/check report for BioC 3.9
ABCDEFGHIJKLMNOPQRS[T]UVWXYZ

CHECK report for tigre on malbec2

This page was generated on 2019-10-16 11:58:22 -0400 (Wed, 16 Oct 2019).

Package 1644/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
tigre 1.38.0
Antti Honkela
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/tigre
Branch: RELEASE_3_9
Last Commit: dec636d
Last Changed Date: 2019-05-02 11:53:14 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: tigre
Version: 1.38.0
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:tigre.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings tigre_1.38.0.tar.gz
StartedAt: 2019-10-16 05:26:05 -0400 (Wed, 16 Oct 2019)
EndedAt: 2019-10-16 05:28:18 -0400 (Wed, 16 Oct 2019)
EllapsedTime: 133.0 seconds
RetCode: 0
Status:  OK 
CheckDir: tigre.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:tigre.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings tigre_1.38.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/tigre.Rcheck’
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘tigre/DESCRIPTION’ ... OK
* this is package ‘tigre’ version ‘1.38.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘tigre’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
             user system elapsed
processData 6.022  0.179   6.214
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.9-bioc/meat/tigre.Rcheck/00check.log’
for details.



Installation output

tigre.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL tigre
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘tigre’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG   -I/usr/local/include  -fpic  -g -O2  -Wall -c miscCFunctions.c -o miscCFunctions.o
gcc -shared -L/home/biocbuild/bbs-3.9-bioc/R/lib -L/usr/local/lib -o tigre.so miscCFunctions.o -L/home/biocbuild/bbs-3.9-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.9-bioc/R/library/00LOCK-tigre/00new/tigre/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tigre)

Tests output


Example timings

tigre.Rcheck/tigre-Ex.timings

nameusersystemelapsed
ExpressionTimeSeries-class0.0010.0000.001
GPLearn1.2560.0751.624
GPModel-class0.0000.0000.001
GPPlot0.0000.0000.001
GPRankTargets000
SCGoptim000
expTransform0.0000.0000.001
export0.0000.0000.001
generateModels000
gpsimCreate000
kernCompute0.0000.0000.001
kernCreate0.0060.0000.007
kernDiagGradX0.0010.0000.001
kernGradient0.0000.0000.001
lnDiffErfs0.0000.0000.001
modelDisplay0.1110.0120.123
modelExpandParam0.0010.0000.000
modelExtractParam0.0960.0040.100
modelGradient0.1260.0000.126
modelTieParam0.0050.0000.006
optimiDefaultConstraint0.0000.0000.001
plotTimeseries0.1120.0000.113
processData6.0220.1796.214
scoreList-class0.0000.0010.001
tigre-package0.0000.0010.000