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INSTALL report for BDMMAcorrect on tokay2

This page was generated on 2019-10-16 12:42:54 -0400 (Wed, 16 Oct 2019).

Package 119/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BDMMAcorrect 1.2.0
ZHENWEI DAI
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/BDMMAcorrect
Branch: RELEASE_3_9
Last Commit: 7ca38db
Last Changed Date: 2019-05-02 11:54:13 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BDMMAcorrect
Version: 1.2.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/BDMMAcorrect_1.2.0.tar.gz && rm -rf BDMMAcorrect.buildbin-libdir && mkdir BDMMAcorrect.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BDMMAcorrect.buildbin-libdir BDMMAcorrect_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL BDMMAcorrect_1.2.0.zip && rm BDMMAcorrect_1.2.0.tar.gz BDMMAcorrect_1.2.0.zip
StartedAt: 2019-10-15 20:53:54 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 20:55:31 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 96.3 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/BDMMAcorrect_1.2.0.tar.gz && rm -rf BDMMAcorrect.buildbin-libdir && mkdir BDMMAcorrect.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BDMMAcorrect.buildbin-libdir BDMMAcorrect_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL BDMMAcorrect_1.2.0.zip && rm BDMMAcorrect_1.2.0.tar.gz BDMMAcorrect_1.2.0.zip
###
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100  369k  100  369k    0     0  3014k      0 --:--:-- --:--:-- --:--:-- 3184k

install for i386

* installing *source* package 'BDMMAcorrect' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"  -DARMA_DONT_USE_OPENMP   -O2 -Wall  -mtune=generic -c MCMC_algorithm.cpp -o MCMC_algorithm.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"  -DARMA_DONT_USE_OPENMP   -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o BDMMAcorrect.dll tmp.def MCMC_algorithm.o RcppExports.o -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -O2 -msse2 -mfpmath=sse -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/BDMMAcorrect.buildbin-libdir/00LOCK-BDMMAcorrect/00new/BDMMAcorrect/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BDMMAcorrect'
    finding HTML links ... done
    BDMMA                                   html  
    L_mean                                  html  
    Microbiome_dat                          html  
    VBatch                                  html  
    fdr_cut                                 html  
    trace_plot                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BDMMAcorrect' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"  -DARMA_DONT_USE_OPENMP   -O2 -Wall  -mtune=generic -c MCMC_algorithm.cpp -o MCMC_algorithm.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"  -DARMA_DONT_USE_OPENMP   -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o BDMMAcorrect.dll tmp.def MCMC_algorithm.o RcppExports.o -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -O2 -msse2 -mfpmath=sse -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/BDMMAcorrect.buildbin-libdir/BDMMAcorrect/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BDMMAcorrect' as BDMMAcorrect_1.2.0.zip
* DONE (BDMMAcorrect)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'BDMMAcorrect' successfully unpacked and MD5 sums checked