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BUILD BIN report for tweeDEseq on celaya2

This page was generated on 2019-04-09 13:03:03 -0400 (Tue, 09 Apr 2019).

Package 1653/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
tweeDEseq 1.29.1
Juan R Gonzalez
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/tweeDEseq
Branch: master
Last Commit: 7d80bff
Last Changed Date: 2019-01-04 13:52:59 -0400 (Fri, 04 Jan 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: tweeDEseq
Version: 1.29.1
Command: rm -rf tweeDEseq.buildbin-libdir && mkdir tweeDEseq.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh tweeDEseq_1.29.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R tweeDEseq.buildbin-libdir
StartedAt: 2019-04-09 07:54:52 -0400 (Tue, 09 Apr 2019)
EndedAt: 2019-04-09 07:55:39 -0400 (Tue, 09 Apr 2019)
EllapsedTime: 47.4 seconds
RetCode: 0
Status:  OK 
PackageFile: tweeDEseq_1.29.1.tgz
PackageFileSize: 479.4 KiB

Command output

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###
### Running command:
###
###   rm -rf tweeDEseq.buildbin-libdir && mkdir tweeDEseq.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh tweeDEseq_1.29.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R tweeDEseq.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=tweeDEseq.buildbin-libdir tweeDEseq_1.29.1.tar.gz'
>>>>>>> 

* installing *source* package ‘tweeDEseq’ ...
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -fPIC  -Wall -g -O2  -c cov_wt_C.c -o cov_wt_C.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -fPIC  -Wall -g -O2  -c init_tweeDEseq.c -o init_tweeDEseq.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -fPIC  -Wall -g -O2  -c loglikGlm.c -o loglikGlm.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -fPIC  -Wall -g -O2  -c logprobs.c -o logprobs.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -fPIC  -Wall -g -O2  -c permtest.c -o permtest.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -fPIC  -Wall -g -O2  -c probs.c -o probs.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -fPIC  -Wall -g -O2  -c zhu2.c -o zhu2.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -fPIC  -Wall -g -O2  -c zhu3.c -o zhu3.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o tweeDEseq.so cov_wt_C.o init_tweeDEseq.o loglikGlm.o logprobs.o permtest.o probs.o zhu2.o zhu3.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.9-bioc/meat/tweeDEseq.buildbin-libdir/00LOCK-tweeDEseq/00new/tweeDEseq/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tweeDEseq)


>>>>>>> 
>>>>>>> FIXING LINKS FOR tweeDEseq.buildbin-libdir/tweeDEseq/libs//tweeDEseq.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "tweeDEseq.buildbin-libdir/tweeDEseq/libs//tweeDEseq.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "tweeDEseq.buildbin-libdir/tweeDEseq/libs//tweeDEseq.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "tweeDEseq.buildbin-libdir/tweeDEseq/libs//tweeDEseq.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "tweeDEseq.buildbin-libdir/tweeDEseq/libs//tweeDEseq.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "tweeDEseq.buildbin-libdir/tweeDEseq/libs//tweeDEseq.so"