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BUILD BIN report for tofsims on tokay2

This page was generated on 2019-04-09 12:25:30 -0400 (Tue, 09 Apr 2019).

Package 1621/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
tofsims 1.11.1
Lorenz Gerber
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/tofsims
Branch: master
Last Commit: f220862
Last Changed Date: 2019-01-04 13:52:24 -0400 (Fri, 04 Jan 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: tofsims
Version: 1.11.1
Command: rm -rf tofsims.buildbin-libdir && mkdir tofsims.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=tofsims.buildbin-libdir tofsims_1.11.1.tar.gz
StartedAt: 2019-04-09 09:07:30 -0400 (Tue, 09 Apr 2019)
EndedAt: 2019-04-09 09:09:02 -0400 (Tue, 09 Apr 2019)
EllapsedTime: 91.5 seconds
RetCode: 0
Status:  OK  
PackageFile: tofsims_1.11.1.zip
PackageFileSize: 1.304 MiB

Command output

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###
### Running command:
###
###   rm -rf tofsims.buildbin-libdir && mkdir tofsims.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=tofsims.buildbin-libdir tofsims_1.11.1.tar.gz
###
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install for i386

* installing *source* package 'tofsims' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c LapackEigen.cpp -o LapackEigen.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c c_importer.cpp -o c_importer.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c nn.cpp -o nn.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c readRawPhi.cpp -o readRawPhi.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c tofsims_init.c -o tofsims_init.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c utilities.cpp -o utilities.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o tofsims.dll tmp.def LapackEigen.o RcppExports.o c_importer.o nn.o readRawPhi.o tofsims_init.o utilities.o -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lRlapack -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/tofsims.buildbin-libdir/00LOCK-tofsims/00new/tofsims/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'tofsims'
    finding HTML links ... done
    EigenDecompose                          html  
    LapackGenEigen                          html  
    MAF                                     html  
    MCR                                     html  
    MNF                                     html  
    MassImage                               html  
    MassSpectra                             html  
    PCA-class                               html  
    PCAnalysis                              html  
    PeakList                                html  
    PrComp                                  html  
    PrinComp                                html  
    RSS-MCR-method                          html  
    RSS                                     html  
    SNR                                     html  
    addFixedWidth                           html  
    addPeaks                                html  
    analysis                                html  
    finding level-2 HTML links ... done

    analysisName                            html  
    baseObject-PrComp-method                html  
    baseObject-PrinComp-method              html  
    baseObject                              html  
    binning                                 html  
    bwApply                                 html  
    cReadRawPhi                             html  
    calibPointNew                           html  
    calibPoints                             html  
    calibration                             html  
    changePeakWidth                         html  
    check.extension                         html  
    computeMNF                              html  
    computeNoise                            html  
    coordToPixel-MassImage-numeric-method   html  
    coordToPixel                            html  
    covDiffCalc                             html  
    ctable                                  html  
    dim-MassImage-method                    html  
    dim-MassSpectra-method                  html  
    extract.header.data                     html  
    findClosestMatch                        html  
    findPeakWidth                           html  
    getTOFs                                 html  
    image                                   html  
    imageMatrix                             html  
    import                                  html  
    import.raw                              html  
    instrument                              html  
    iters-MCR-method                        html  
    iters                                   html  
    itzipName-set                           html  
    itzipName                               html  
    legend.col                              html  
    look.for.itzip.property                 html  
    makeTIC-MassSpectra-method              html  
    makeTIC                                 html  
    manualSelectPeaks                       html  
    mz                                      html  
    nComp                                   html  
    nPeaks                                  html  
    ndim-MassSpectra-method                 html  
    ndim                                    html  
    nearestNeighbourMean                    html  
    nnMNF                                   html  
    nnMean                                  html  
    noPlottingData-PCA-method               html  
    noPlottingData                          html  
    nz                                      html  
    overlayPlot                             html  
    parIndicesSearch                        html  
    pcaLoadings                             html  
    pcaMAF                                  html  
    pcaScores                               html  
    peakIDs                                 html  
    peakMzs                                 html  
    peakPick                                html  
    peakWidths                              html  
    peaks2Spectra                           html  
    plot-MassImage-missing-method           html  
    plot-PeakList-missing-method            html  
    plot                                    html  
    points                                  html  
    poissonScaling                          html  
    readBIF                                 html  
    recalibrate                             html  
    reduceSpectrumResolution                html  
    removePeaks                             html  
    resids-MCR-method                       html  
    resids                                  html  
    scale                                   html  
    show-MassImage-method                   html  
    show-MassSpectra-method                 html  
    show-PeakList-method                    html  
    smoothScatter                           html  
    smootherGolay                           html  
    smootherSpline                          html  
    subset                                  html  
    tofsims-package                         html  
    unitMassPeaks                           html  
    validMassImageObject                    html  
    validMassSpectraObject                  html  
    validPCAObject                          html  
    validPeakListObject                     html  
    xdim-MassImage-method                   html  
    xdim-PCA-method                         html  
    xdim-set                                html  
    xdim                                    html  
    xy                                      html  
    xySpec                                  html  
    ydim-MassImage-method                   html  
    ydim-PCA-method                         html  
    ydim-set                                html  
    ydim                                    html  
    zdim-MassSpectra-method                 html  
    zdim                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'tofsims' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c LapackEigen.cpp -o LapackEigen.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c c_importer.cpp -o c_importer.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c nn.cpp -o nn.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c readRawPhi.cpp -o readRawPhi.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c tofsims_init.c -o tofsims_init.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c utilities.cpp -o utilities.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o tofsims.dll tmp.def LapackEigen.o RcppExports.o c_importer.o nn.o readRawPhi.o tofsims_init.o utilities.o -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lRlapack -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/tofsims.buildbin-libdir/tofsims/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'tofsims' as tofsims_1.11.1.zip
* DONE (tofsims)