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INSTALL report for tilingArray on tokay2

This page was generated on 2019-04-09 11:54:14 -0400 (Tue, 09 Apr 2019).

Package 1610/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
tilingArray 1.61.0
Zhenyu Xu
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/tilingArray
Branch: master
Last Commit: 4d64ea7
Last Changed Date: 2018-10-30 11:54:26 -0400 (Tue, 30 Oct 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: tilingArray
Version: 1.61.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/tilingArray_1.61.0.tar.gz && rm -rf tilingArray.buildbin-libdir && mkdir tilingArray.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=tilingArray.buildbin-libdir tilingArray_1.61.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL tilingArray_1.61.0.zip && rm tilingArray_1.61.0.tar.gz tilingArray_1.61.0.zip
StartedAt: 2019-04-08 19:21:51 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 19:23:03 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 72.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/tilingArray_1.61.0.tar.gz && rm -rf tilingArray.buildbin-libdir && mkdir tilingArray.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=tilingArray.buildbin-libdir tilingArray_1.61.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL tilingArray_1.61.0.zip && rm tilingArray_1.61.0.tar.gz tilingArray_1.61.0.zip
###
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100 1161k  100 1161k    0     0  15.9M      0 --:--:-- --:--:-- --:--:-- 17.7M

install for i386

* installing *source* package 'tilingArray' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c findsegments.c -o findsegments.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c sampleStep.c -o sampleStep.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o tilingArray.dll tmp.def findsegments.o sampleStep.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/tilingArray.buildbin-libdir/00LOCK-tilingArray/00new/tilingArray/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'tilingArray'
    finding HTML links ... done
    PMindex                                 html  
    breakpointsPretend                      html  
    class-segmentation                      html  
    comparisonPlot                          html  
    costMatrix                              html  
    findsegments                            html  
    gffSub                                  html  
    normalizeByReference                    html  
    otherStrand                             html  
    plotAlongChrom                          html  
    plotAlongChromLegend                    html  
    plotFeatures                            html  
    plotSegmentationDots                    html  
    plotSegmentationHeatmap                 html  
    plotpenLL                               html  
    posMin                                  html  
    qcPlots                                 html  
    readCel2eSet                            html  
    sampleStep                              html  
    segChrom                                html  
    segment                                 html  
    segnf                                   html  
    tilingArray-package                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'tilingArray' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c findsegments.c -o findsegments.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c sampleStep.c -o sampleStep.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o tilingArray.dll tmp.def findsegments.o sampleStep.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/tilingArray.buildbin-libdir/tilingArray/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'tilingArray' as tilingArray_1.61.0.zip
* DONE (tilingArray)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'tilingArray' successfully unpacked and MD5 sums checked