Package: supraHex

Version: 1.21.1

Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:supraHex.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings supraHex_1.21.1.tar.gz

StartedAt: 2019-04-09 06:14:22 -0400 (Tue, 09 Apr 2019)

EndedAt: 2019-04-09 06:15:37 -0400 (Tue, 09 Apr 2019)

EllapsedTime: 75.0 seconds

RetCode: 0

Status:  OK

CheckDir: supraHex.Rcheck

Warnings: 0

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### Running command:
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###   C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:supraHex.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings supraHex_1.21.1.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/supraHex.Rcheck'
* using R Under development (unstable) (2019-03-09 r76216)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'supraHex/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'supraHex' version '1.21.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'supraHex' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/supraHex_1.21.1.tar.gz && rm -rf supraHex.buildbin-libdir && mkdir supraHex.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=supraHex.buildbin-libdir supraHex_1.21.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL supraHex_1.21.1.zip && rm supraHex_1.21.1.tar.gz supraHex_1.21.1.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 2931k  100 2931k    0     0  12.8M      0 --:--:-- --:--:-- --:--:-- 13.3M

install for i386

* installing *source* package 'supraHex' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'supraHex'
    finding HTML links ... done
    Fang                                    html  
    Golub                                   html  
    Xiang                                   html  
    sBMH                                    html  
    sCompReorder                            html  
    sDistance                               html  
    sDmat                                   html  
    sDmatCluster                            html  
    sDmatMinima                             html  
    sHexDist                                html  
    sHexGrid                                html  
    sHexGridVariant                         html  
    sHexPolygon                             html  
    sInitial                                html  
    sMapOverlay                             html  
    sNeighAny                               html  
    sNeighDirect                            html  
    sPipeline                               html  
    sTopology                               html  
    sTrainBatch                             html  
    sTrainSeq                               html  
    sTrainology                             html  
    sWriteData                              html  
    visColoralpha                           html  
    visColorbar                             html  
    visColormap                             html  
    visCompReorder                          html  
    visDmatCluster                          html  
    visDmatHeatmap                          html  
    visHeatmap                              html  
    visHeatmapAdv                           html  
    visHexAnimate                           html  
    visHexBarplot                           html  
    visHexComp                              html  
    visHexGrid                              html  
    visHexMapping                           html  
    visHexMulComp                           html  
    visHexPattern                           html  
    visKernels                              html  
    visTreeBSclust                          html  
    visTreeBootstrap                        html  
    visVp                                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'supraHex' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'supraHex' as supraHex_1.21.1.zip
* DONE (supraHex)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'supraHex' successfully unpacked and MD5 sums checked