snapCGH 1.53.0
John Marioni
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/snapCGH |
| Branch: master |
| Last Commit: 7e6feba |
| Last Changed Date: 2018-10-30 11:54:27 -0400 (Tue, 30 Oct 2018) |
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | [ OK ] | OK | OK | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL snapCGH
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘snapCGH’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c optimizer.c -o optimizer.o
optimizer.c: In function ‘fr_two’:
optimizer.c:26:30: warning: unused variable ‘temp3’ [-Wunused-variable]
double denom, temp, temp2, temp3;
^˜˜˜˜
optimizer.c:26:23: warning: unused variable ‘temp2’ [-Wunused-variable]
double denom, temp, temp2, temp3;
^˜˜˜˜
optimizer.c:26:10: warning: unused variable ‘denom’ [-Wunused-variable]
double denom, temp, temp2, temp3;
^˜˜˜˜
optimizer.c: In function ‘fr_three’:
optimizer.c:195:30: warning: unused variable ‘temp3’ [-Wunused-variable]
double denom, temp, temp2, temp3;
^˜˜˜˜
optimizer.c:195:23: warning: unused variable ‘temp2’ [-Wunused-variable]
double denom, temp, temp2, temp3;
^˜˜˜˜
optimizer.c:195:10: warning: unused variable ‘denom’ [-Wunused-variable]
double denom, temp, temp2, temp3;
^˜˜˜˜
optimizer.c:194:69: warning: unused variable ‘alphahat’ [-Wunused-variable]
double gammaA[3][3], gammaB[3][3], gammaC[3][3], alpha[3][nrow1], alphahat[3][nrow1], emis_prob[3][nrow1];
^˜˜˜˜˜˜˜
optimizer.c: In function ‘fr_four’:
optimizer.c:413:30: warning: unused variable ‘temp3’ [-Wunused-variable]
double denom, temp, temp2, temp3;
^˜˜˜˜
optimizer.c:413:23: warning: unused variable ‘temp2’ [-Wunused-variable]
double denom, temp, temp2, temp3;
^˜˜˜˜
optimizer.c:413:10: warning: unused variable ‘denom’ [-Wunused-variable]
double denom, temp, temp2, temp3;
^˜˜˜˜
optimizer.c:412:69: warning: unused variable ‘alphahat’ [-Wunused-variable]
double gammaA[4][4], gammaB[4][4], gammaC[4][4], alpha[4][nrow1], alphahat[4][nrow1], emis_prob[4][nrow1];
^˜˜˜˜˜˜˜
optimizer.c: In function ‘fr_five’:
optimizer.c:687:30: warning: unused variable ‘temp3’ [-Wunused-variable]
double denom, temp, temp2, temp3;
^˜˜˜˜
optimizer.c:687:23: warning: unused variable ‘temp2’ [-Wunused-variable]
double denom, temp, temp2, temp3;
^˜˜˜˜
optimizer.c:687:10: warning: unused variable ‘denom’ [-Wunused-variable]
double denom, temp, temp2, temp3;
^˜˜˜˜
optimizer.c:686:69: warning: unused variable ‘alphahat’ [-Wunused-variable]
double gammaA[5][5], gammaB[5][5], gammaC[5][5], alpha[5][nrow1], alphahat[5][nrow1], emis_prob[5][nrow1];
^˜˜˜˜˜˜˜
gcc -shared -L/home/biocbuild/bbs-3.9-bioc/R/lib -L/usr/local/lib -o snapCGH.so optimizer.o -L/home/biocbuild/bbs-3.9-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.9-bioc/R/library/00LOCK-snapCGH/00new/snapCGH/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Note: more than one default provided in switch() call
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (snapCGH)