Package: sitePath

Version: 0.99.24

Command: rm -rf sitePath.buildbin-libdir && mkdir sitePath.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh sitePath_0.99.24.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R sitePath.buildbin-libdir

StartedAt: 2019-04-09 06:31:32 -0400 (Tue, 09 Apr 2019)

EndedAt: 2019-04-09 06:32:48 -0400 (Tue, 09 Apr 2019)

EllapsedTime: 75.9 seconds

RetCode: 0

Status:  OK

PackageFile: sitePath_0.99.24.tgz

PackageFileSize: 416.2 KiB

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### Running command:
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###   rm -rf sitePath.buildbin-libdir && mkdir sitePath.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh sitePath_0.99.24.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R sitePath.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=sitePath.buildbin-libdir sitePath_0.99.24.tar.gz'
>>>>>>> 

* installing *source* package ‘sitePath’ ...
** libs
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c exportFunc.cpp -o exportFunc.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c treemer.cpp -o treemer.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c util.cpp -o util.o
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o sitePath.so RcppExports.o exportFunc.o treemer.o util.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.9-bioc/meat/sitePath.buildbin-libdir/sitePath/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (sitePath)


>>>>>>> 
>>>>>>> FIXING LINKS FOR sitePath.buildbin-libdir/sitePath/libs//sitePath.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "sitePath.buildbin-libdir/sitePath/libs//sitePath.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "sitePath.buildbin-libdir/sitePath/libs//sitePath.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "sitePath.buildbin-libdir/sitePath/libs//sitePath.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "sitePath.buildbin-libdir/sitePath/libs//sitePath.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "sitePath.buildbin-libdir/sitePath/libs//sitePath.so"