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BUILD report for scruff on merida2

This page was generated on 2019-04-09 13:37:15 -0400 (Tue, 09 Apr 2019).

Package 1449/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
scruff 1.1.6
Zhe Wang
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/scruff
Branch: master
Last Commit: ed57010
Last Changed Date: 2019-04-06 21:52:10 -0400 (Sat, 06 Apr 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64 ...NOT SUPPORTED...
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 
merida2 OS X 10.11.6 El Capitan / x86_64  OK [ ERROR ] skipped  skipped 

Summary

Package: scruff
Version: 1.1.6
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scruff
StartedAt: 2019-04-08 22:34:44 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 22:39:25 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 281.0 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scruff
###
##############################################################################
##############################################################################


* checking for file ‘scruff/DESCRIPTION’ ... OK
* preparing ‘scruff’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
2019-04-08 22:36:00 Start running scruff ...
2019-04-08 22:36:00 Start demultiplexing ...
Input sample information for FASTQ files:
Cell barcode input vector:

2019-04-08 22:36:09 ... Write demultiplex summary for all experiments to ./Demultiplex/20190408_223609_demultiplex.tab
... Initialize SingleCellExperiment object.
... Add demultiplex summary to SCE colData.
2019-04-08 22:36:10 ... Demultiplex done!
2019-04-08 22:36:10 Start alignment ...
... Input fastq paths:
2019-04-08 22:36:10 ... Creating output directory ./Alignment

        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0001.fastq.gz                              ||
|| Output file   : example_b1_cell_0001.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:10, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [2,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 60                                           ||
||                      Mapped : 3 (5.0%)                                     ||
||             Uniquely mapped : 3                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 57                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0002.fastq.gz                              ||
|| Output file   : example_b1_cell_0002.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:12, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 18                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 18                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0003.fastq.gz                              ||
|| Output file   : example_b1_cell_0003.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:14, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 19                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 19                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0004.fastq.gz                              ||
|| Output file   : example_b1_cell_0004.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:16, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 27                                           ||
||                      Mapped : 1 (3.7%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 26                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0005.fastq.gz                              ||
|| Output file   : example_b1_cell_0005.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:18, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 26                                           ||
||                      Mapped : 1 (3.8%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 25                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0006.fastq.gz                              ||
|| Output file   : example_b1_cell_0006.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:20, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 53                                           ||
||                      Mapped : 7 (13.2%)                                    ||
||             Uniquely mapped : 7                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 46                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0007.fastq.gz                              ||
|| Output file   : example_b1_cell_0007.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:22, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 25                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 25                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0008.fastq.gz                              ||
|| Output file   : example_b1_cell_0008.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:24, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 85                                           ||
||                      Mapped : 7 (8.2%)                                     ||
||             Uniquely mapped : 7                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 78                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0009.fastq.gz                              ||
|| Output file   : example_b1_cell_0009.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:27, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 18                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 18                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0010.fastq.gz                              ||
|| Output file   : example_b1_cell_0010.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:29, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 13                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 13                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0011.fastq.gz                              ||
|| Output file   : example_b1_cell_0011.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:31, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 17                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 17                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0012.fastq.gz                              ||
|| Output file   : example_b1_cell_0012.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:33, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 25                                           ||
||                      Mapped : 3 (12.0%)                                    ||
||             Uniquely mapped : 3                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 22                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0013.fastq.gz                              ||
|| Output file   : example_b1_cell_0013.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:35, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 23                                           ||
||                      Mapped : 1 (4.3%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 22                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0014.fastq.gz                              ||
|| Output file   : example_b1_cell_0014.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:37, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 12                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 12                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0015.fastq.gz                              ||
|| Output file   : example_b1_cell_0015.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:39, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 22                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 22                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0016.fastq.gz                              ||
|| Output file   : example_b1_cell_0016.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:41, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 13                                           ||
||                      Mapped : 2 (15.4%)                                    ||
||             Uniquely mapped : 2                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 11                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0017.fastq.gz                              ||
|| Output file   : example_b1_cell_0017.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:43, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 23                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 23                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0018.fastq.gz                              ||
|| Output file   : example_b1_cell_0018.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:45, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 24                                           ||
||                      Mapped : 5 (20.8%)                                    ||
||             Uniquely mapped : 5                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 19                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0019.fastq.gz                              ||
|| Output file   : example_b1_cell_0019.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:47, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 263                                          ||
||                      Mapped : 18 (6.8%)                                    ||
||             Uniquely mapped : 18                                           ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 245                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0020.fastq.gz                              ||
|| Output file   : example_b1_cell_0020.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:49, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 42                                           ||
||                      Mapped : 6 (14.3%)                                    ||
||             Uniquely mapped : 6                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 36                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0021.fastq.gz                              ||
|| Output file   : example_b1_cell_0021.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:51, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 5                                            ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 5                                            ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0022.fastq.gz                              ||
|| Output file   : example_b1_cell_0022.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:54, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 24                                           ||
||                      Mapped : 3 (12.5%)                                    ||
||             Uniquely mapped : 3                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 21                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0023.fastq.gz                              ||
|| Output file   : example_b1_cell_0023.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:56, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 19                                           ||
||                      Mapped : 2 (10.5%)                                    ||
||             Uniquely mapped : 2                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 17                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0024.fastq.gz                              ||
|| Output file   : example_b1_cell_0024.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:58, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 26                                           ||
||                      Mapped : 1 (3.8%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 25                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0025.fastq.gz                              ||
|| Output file   : example_b1_cell_0025.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:00, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 23                                           ||
||                      Mapped : 1 (4.3%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 22                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0026.fastq.gz                              ||
|| Output file   : example_b1_cell_0026.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:02, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 32                                           ||
||                      Mapped : 1 (3.1%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 31                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0027.fastq.gz                              ||
|| Output file   : example_b1_cell_0027.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:04, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 26                                           ||
||                      Mapped : 2 (7.7%)                                     ||
||             Uniquely mapped : 2                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 24                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0028.fastq.gz                              ||
|| Output file   : example_b1_cell_0028.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:06, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 26                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 26                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0029.fastq.gz                              ||
|| Output file   : example_b1_cell_0029.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:09, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 30                                           ||
||                      Mapped : 2 (6.7%)                                     ||
||             Uniquely mapped : 2                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 28                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0030.fastq.gz                              ||
|| Output file   : example_b1_cell_0030.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:11, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 36                                           ||
||                      Mapped : 1 (2.8%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 35                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0031.fastq.gz                              ||
|| Output file   : example_b1_cell_0031.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:13, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [2,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 457                                          ||
||                      Mapped : 49 (10.7%)                                   ||
||             Uniquely mapped : 49                                           ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 408                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0032.fastq.gz                              ||
|| Output file   : example_b1_cell_0032.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:15, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 27                                           ||
||                      Mapped : 1 (3.7%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 26                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0033.fastq.gz                              ||
|| Output file   : example_b1_cell_0033.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:17, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 20                                           ||
||                      Mapped : 1 (5.0%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 19                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0034.fastq.gz                              ||
|| Output file   : example_b1_cell_0034.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:20, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 14                                           ||
||                      Mapped : 1 (7.1%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 13                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0035.fastq.gz                              ||
|| Output file   : example_b1_cell_0035.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:22, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 11                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 11                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0036.fastq.gz                              ||
|| Output file   : example_b1_cell_0036.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:24, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 23                                           ||
||                      Mapped : 2 (8.7%)                                     ||
||             Uniquely mapped : 2                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 21                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0037.fastq.gz                              ||
|| Output file   : example_b1_cell_0037.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:26, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 56                                           ||
||                      Mapped : 1 (1.8%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 55                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0038.fastq.gz                              ||
|| Output file   : example_b1_cell_0038.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:28, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [2,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 48                                           ||
||                      Mapped : 1 (2.1%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 47                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0039.fastq.gz                              ||
|| Output file   : example_b1_cell_0039.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:30, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 17                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 17                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0040.fastq.gz                              ||
|| Output file   : example_b1_cell_0040.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:32, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 44                                           ||
||                      Mapped : 1 (2.3%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 43                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0041.fastq.gz                              ||
|| Output file   : example_b1_cell_0041.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:34, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 49                                           ||
||                      Mapped : 3 (6.1%)                                     ||
||             Uniquely mapped : 3                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 46                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0042.fastq.gz                              ||
|| Output file   : example_b1_cell_0042.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:36, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 319                                          ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 319                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0043.fastq.gz                              ||
|| Output file   : example_b1_cell_0043.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:38, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 30                                           ||
||                      Mapped : 1 (3.3%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 29                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0044.fastq.gz                              ||
|| Output file   : example_b1_cell_0044.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:40, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 67                                           ||
||                      Mapped : 3 (4.5%)                                     ||
||             Uniquely mapped : 3                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 64                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0045.fastq.gz                              ||
|| Output file   : example_b1_cell_0045.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:42, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [2,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 245                                          ||
||                      Mapped : 1 (0.4%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 244                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0046.fastq.gz                              ||
|| Output file   : example_b1_cell_0046.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:44, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 101                                          ||
||                      Mapped : 1 (1.0%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 100                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0047.fastq.gz                              ||
|| Output file   : example_b1_cell_0047.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:46, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [2,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 49                                           ||
||                      Mapped : 1 (2.0%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 48                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0048.fastq.gz                              ||
|| Output file   : example_b1_cell_0048.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:48, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [2,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 165                                          ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 165                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0049.fastq.gz                              ||
|| Output file   : example_b1_cell_0049.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:50, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 66                                           ||
||                      Mapped : 3 (4.5%)                                     ||
||             Uniquely mapped : 3                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 63                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0050.fastq.gz                              ||
|| Output file   : example_b1_cell_0050.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:52, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 19                                           ||
||                      Mapped : 2 (10.5%)                                    ||
||             Uniquely mapped : 2                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 17                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0051.fastq.gz                              ||
|| Output file   : example_b1_cell_0051.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:54, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [2,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 45                                           ||
||                      Mapped : 2 (4.4%)                                     ||
||             Uniquely mapped : 2                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 43                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0052.fastq.gz                              ||
|| Output file   : example_b1_cell_0052.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:56, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 79                                           ||
||                      Mapped : 3 (3.8%)                                     ||
||             Uniquely mapped : 3                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 76                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0053.fastq.gz                              ||
|| Output file   : example_b1_cell_0053.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:58, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 51                                           ||
||                      Mapped : 1 (2.0%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 50                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0054.fastq.gz                              ||
|| Output file   : example_b1_cell_0054.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:00, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [2,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 47                                           ||
||                      Mapped : 1 (2.1%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 46                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0055.fastq.gz                              ||
|| Output file   : example_b1_cell_0055.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:02, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 44                                           ||
||                      Mapped : 4 (9.1%)                                     ||
||             Uniquely mapped : 4                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 40                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0056.fastq.gz                              ||
|| Output file   : example_b1_cell_0056.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:04, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 37                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 37                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0057.fastq.gz                              ||
|| Output file   : example_b1_cell_0057.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:07, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [2,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 243                                          ||
||                      Mapped : 10 (4.1%)                                    ||
||             Uniquely mapped : 10                                           ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 233                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0058.fastq.gz                              ||
|| Output file   : example_b1_cell_0058.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:08, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 27                                           ||
||                      Mapped : 1 (3.7%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 26                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0059.fastq.gz                              ||
|| Output file   : example_b1_cell_0059.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:10, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 36                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 36                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0060.fastq.gz                              ||
|| Output file   : example_b1_cell_0060.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:12, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 46                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 46                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0061.fastq.gz                              ||
|| Output file   : example_b1_cell_0061.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:14, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 50                                           ||
||                      Mapped : 1 (2.0%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 49                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0062.fastq.gz                              ||
|| Output file   : example_b1_cell_0062.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:16, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 93                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 93                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0063.fastq.gz                              ||
|| Output file   : example_b1_cell_0063.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:18, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 47                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 47                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0064.fastq.gz                              ||
|| Output file   : example_b1_cell_0064.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:20, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 46                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 46                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0065.fastq.gz                              ||
|| Output file   : example_b1_cell_0065.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:22, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 7                                            ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 7                                            ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0066.fastq.gz                              ||
|| Output file   : example_b1_cell_0066.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:24, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 2                                            ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 2                                            ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0067.fastq.gz                              ||
|| Output file   : example_b1_cell_0067.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:26, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 4                                            ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 4                                            ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0068.fastq.gz                              ||
|| Output file   : example_b1_cell_0068.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:29, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 27                                           ||
||                      Mapped : 3 (11.1%)                                    ||
||             Uniquely mapped : 3                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 24                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0069.fastq.gz                              ||
|| Output file   : example_b1_cell_0069.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:31, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 8                                            ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 8                                            ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0070.fastq.gz                              ||
|| Output file   : example_b1_cell_0070.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:33, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 4                                            ||
||                      Mapped : 1 (25.0%)                                    ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 3                                            ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0071.fastq.gz                              ||
|| Output file   : example_b1_cell_0071.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:35, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 1                                            ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 1                                            ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0073.fastq.gz                              ||
|| Output file   : example_b1_cell_0073.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:37, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 25                                           ||
||                      Mapped : 1 (4.0%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 24                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0074.fastq.gz                              ||
|| Output file   : example_b1_cell_0074.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:39, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 30                                           ||
||                      Mapped : 1 (3.3%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 29                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0075.fastq.gz                              ||
|| Output file   : example_b1_cell_0075.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:41, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 4                                            ||
||                      Mapped : 1 (25.0%)                                    ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 3                                            ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0076.fastq.gz                              ||
|| Output file   : example_b1_cell_0076.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:43, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 38                                           ||
||                      Mapped : 1 (2.6%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 37                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0077.fastq.gz                              ||
|| Output file   : example_b1_cell_0077.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:45, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 11                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 11                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0078.fastq.gz                              ||
|| Output file   : example_b1_cell_0078.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:47, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 6                                            ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 6                                            ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0079.fastq.gz                              ||
|| Output file   : example_b1_cell_0079.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:49, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 3                                            ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 3                                            ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0080.fastq.gz                              ||
|| Output file   : example_b1_cell_0080.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:51, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 18                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 18                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0081.fastq.gz                              ||
|| Output file   : example_b1_cell_0081.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:53, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 2                                            ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 2                                            ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0082.fastq.gz                              ||
|| Output file   : example_b1_cell_0082.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:55, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 28                                           ||
||                      Mapped : 2 (7.1%)                                     ||
||             Uniquely mapped : 2                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 26                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0083.fastq.gz                              ||
|| Output file   : example_b1_cell_0083.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:57, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 27                                           ||
||                      Mapped : 1 (3.7%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 26                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0084.fastq.gz                              ||
|| Output file   : example_b1_cell_0084.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:59, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 30                                           ||
||                      Mapped : 1 (3.3%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 29                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0085.fastq.gz                              ||
|| Output file   : example_b1_cell_0085.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:39:01, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 57                                           ||
||                      Mapped : 1 (1.8%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 56                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0086.fastq.gz                              ||
|| Output file   : example_b1_cell_0086.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:39:03, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 36                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 36                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0087.fastq.gz                              ||
|| Output file   : example_b1_cell_0087.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:39:05, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 37                                           ||
||                      Mapped : 2 (5.4%)                                     ||
||             Uniquely mapped : 2                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 35                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0088.fastq.gz                              ||
|| Output file   : example_b1_cell_0088.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:39:06, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 32                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 32                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0089.fastq.gz                              ||
|| Output file   : example_b1_cell_0089.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:39:08, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 24                                           ||
||                      Mapped : 1 (4.2%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 23                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0090.fastq.gz                              ||
|| Output file   : example_b1_cell_0090.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:39:10, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 59                                           ||
||                      Mapped : 3 (5.1%)                                     ||
||             Uniquely mapped : 3                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 56                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0091.fastq.gz                              ||
|| Output file   : example_b1_cell_0091.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:39:12, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 144                                          ||
||                      Mapped : 1 (0.7%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 143                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0092.fastq.gz                              ||
|| Output file   : example_b1_cell_0092.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:39:14, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 55                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 55                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0093.fastq.gz                              ||
|| Output file   : example_b1_cell_0093.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:39:16, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 48                                           ||
||                      Mapped : 1 (2.1%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 47                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0094.fastq.gz                              ||
|| Output file   : example_b1_cell_0094.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:39:18, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [8,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 71                                           ||
||                      Mapped : 1 (1.4%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 70                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_b1_cell_0095.fastq.gz                              ||
|| Output file   : example_b1_cell_0095.BAM (BAM)                             ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:39:20, pid=3768) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [2,37]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 3,979                                        ||
||                      Mapped : 453 (11.4%)                                  ||
||             Uniquely mapped : 453                                          ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 3,526                                        ||
||                                                                            ||
||                      Indels : 4                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0001.fastq.gz                             ||
|| Output file   : example_1h1_cell_0001.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:10, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 84                                           ||
||                      Mapped : 4 (4.8%)                                     ||
||             Uniquely mapped : 4                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 80                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0002.fastq.gz                             ||
|| Output file   : example_1h1_cell_0002.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:12, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 60                                           ||
||                      Mapped : 2 (3.3%)                                     ||
||             Uniquely mapped : 2                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 58                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0003.fastq.gz                             ||
|| Output file   : example_1h1_cell_0003.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:14, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 14                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 14                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0004.fastq.gz                             ||
|| Output file   : example_1h1_cell_0004.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:16, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 111                                          ||
||                      Mapped : 3 (2.7%)                                     ||
||             Uniquely mapped : 3                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 108                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0005.fastq.gz                             ||
|| Output file   : example_1h1_cell_0005.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:18, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 101                                          ||
||                      Mapped : 1 (1.0%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 100                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0006.fastq.gz                             ||
|| Output file   : example_1h1_cell_0006.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:20, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 64                                           ||
||                      Mapped : 3 (4.7%)                                     ||
||             Uniquely mapped : 3                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 61                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0007.fastq.gz                             ||
|| Output file   : example_1h1_cell_0007.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:22, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 41                                           ||
||                      Mapped : 3 (7.3%)                                     ||
||             Uniquely mapped : 3                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 38                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0008.fastq.gz                             ||
|| Output file   : example_1h1_cell_0008.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:24, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 85                                           ||
||                      Mapped : 2 (2.4%)                                     ||
||             Uniquely mapped : 2                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 83                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0009.fastq.gz                             ||
|| Output file   : example_1h1_cell_0009.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:27, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 127                                          ||
||                      Mapped : 5 (3.9%)                                     ||
||             Uniquely mapped : 5                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 122                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0010.fastq.gz                             ||
|| Output file   : example_1h1_cell_0010.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:29, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 108                                          ||
||                      Mapped : 1 (0.9%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 107                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0011.fastq.gz                             ||
|| Output file   : example_1h1_cell_0011.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:31, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 87                                           ||
||                      Mapped : 2 (2.3%)                                     ||
||             Uniquely mapped : 2                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 85                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0012.fastq.gz                             ||
|| Output file   : example_1h1_cell_0012.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:33, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 72                                           ||
||                      Mapped : 1 (1.4%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 71                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0013.fastq.gz                             ||
|| Output file   : example_1h1_cell_0013.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:35, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 30                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 30                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0014.fastq.gz                             ||
|| Output file   : example_1h1_cell_0014.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:37, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 35                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 35                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0015.fastq.gz                             ||
|| Output file   : example_1h1_cell_0015.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:39, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 38                                           ||
||                      Mapped : 2 (5.3%)                                     ||
||             Uniquely mapped : 2                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 36                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0016.fastq.gz                             ||
|| Output file   : example_1h1_cell_0016.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:41, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 138                                          ||
||                      Mapped : 1 (0.7%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 137                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0017.fastq.gz                             ||
|| Output file   : example_1h1_cell_0017.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:43, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 104                                          ||
||                      Mapped : 1 (1.0%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 103                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0018.fastq.gz                             ||
|| Output file   : example_1h1_cell_0018.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:45, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [2,36]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 80                                           ||
||                      Mapped : 2 (2.5%)                                     ||
||             Uniquely mapped : 2                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 78                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0019.fastq.gz                             ||
|| Output file   : example_1h1_cell_0019.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:47, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 126                                          ||
||                      Mapped : 1 (0.8%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 125                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0020.fastq.gz                             ||
|| Output file   : example_1h1_cell_0020.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:49, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [2,36]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 74                                           ||
||                      Mapped : 1 (1.4%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 73                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0021.fastq.gz                             ||
|| Output file   : example_1h1_cell_0021.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:51, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 64                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 64                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0022.fastq.gz                             ||
|| Output file   : example_1h1_cell_0022.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:53, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [2,36]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 69                                           ||
||                      Mapped : 1 (1.4%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 68                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0023.fastq.gz                             ||
|| Output file   : example_1h1_cell_0023.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:56, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 116                                          ||
||                      Mapped : 3 (2.6%)                                     ||
||             Uniquely mapped : 3                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 113                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0024.fastq.gz                             ||
|| Output file   : example_1h1_cell_0024.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:36:58, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 58                                           ||
||                      Mapped : 2 (3.4%)                                     ||
||             Uniquely mapped : 2                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 56                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0025.fastq.gz                             ||
|| Output file   : example_1h1_cell_0025.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:00, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 15                                           ||
||                      Mapped : 1 (6.7%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 14                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0026.fastq.gz                             ||
|| Output file   : example_1h1_cell_0026.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:02, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 57                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 57                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0027.fastq.gz                             ||
|| Output file   : example_1h1_cell_0027.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:04, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 30                                           ||
||                      Mapped : 2 (6.7%)                                     ||
||             Uniquely mapped : 2                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 28                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0028.fastq.gz                             ||
|| Output file   : example_1h1_cell_0028.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:06, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 50                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 50                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0029.fastq.gz                             ||
|| Output file   : example_1h1_cell_0029.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:08, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [2,36]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 123                                          ||
||                      Mapped : 3 (2.4%)                                     ||
||             Uniquely mapped : 3                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 120                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0030.fastq.gz                             ||
|| Output file   : example_1h1_cell_0030.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:11, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 99                                           ||
||                      Mapped : 4 (4.0%)                                     ||
||             Uniquely mapped : 4                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 95                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0031.fastq.gz                             ||
|| Output file   : example_1h1_cell_0031.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:13, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 78                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 78                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0032.fastq.gz                             ||
|| Output file   : example_1h1_cell_0032.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:15, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 36                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 36                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0033.fastq.gz                             ||
|| Output file   : example_1h1_cell_0033.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:17, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 77                                           ||
||                      Mapped : 6 (7.8%)                                     ||
||             Uniquely mapped : 6                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 71                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0034.fastq.gz                             ||
|| Output file   : example_1h1_cell_0034.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:19, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 120                                          ||
||                      Mapped : 4 (3.3%)                                     ||
||             Uniquely mapped : 4                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 116                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0035.fastq.gz                             ||
|| Output file   : example_1h1_cell_0035.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:22, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 100                                          ||
||                      Mapped : 2 (2.0%)                                     ||
||             Uniquely mapped : 2                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 98                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0036.fastq.gz                             ||
|| Output file   : example_1h1_cell_0036.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:24, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 37                                           ||
||                      Mapped : 4 (10.8%)                                    ||
||             Uniquely mapped : 4                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 33                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0037.fastq.gz                             ||
|| Output file   : example_1h1_cell_0037.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:26, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 49                                           ||
||                      Mapped : 2 (4.1%)                                     ||
||             Uniquely mapped : 2                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 47                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0038.fastq.gz                             ||
|| Output file   : example_1h1_cell_0038.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:28, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 99                                           ||
||                      Mapped : 2 (2.0%)                                     ||
||             Uniquely mapped : 2                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 97                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0039.fastq.gz                             ||
|| Output file   : example_1h1_cell_0039.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:30, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 91                                           ||
||                      Mapped : 1 (1.1%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 90                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0040.fastq.gz                             ||
|| Output file   : example_1h1_cell_0040.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:32, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [2,36]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 69                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 69                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0041.fastq.gz                             ||
|| Output file   : example_1h1_cell_0041.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:34, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 121                                          ||
||                      Mapped : 2 (1.7%)                                     ||
||             Uniquely mapped : 2                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 119                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0042.fastq.gz                             ||
|| Output file   : example_1h1_cell_0042.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:36, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 70                                           ||
||                      Mapped : 1 (1.4%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 69                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0043.fastq.gz                             ||
|| Output file   : example_1h1_cell_0043.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:38, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 174                                          ||
||                      Mapped : 7 (4.0%)                                     ||
||             Uniquely mapped : 7                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 167                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0044.fastq.gz                             ||
|| Output file   : example_1h1_cell_0044.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:39, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [2,36]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 285                                          ||
||                      Mapped : 5 (1.8%)                                     ||
||             Uniquely mapped : 5                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 280                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0046.fastq.gz                             ||
|| Output file   : example_1h1_cell_0046.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:41, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 144                                          ||
||                      Mapped : 4 (2.8%)                                     ||
||             Uniquely mapped : 4                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 140                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0047.fastq.gz                             ||
|| Output file   : example_1h1_cell_0047.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:43, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [2,36]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 93                                           ||
||                      Mapped : 1 (1.1%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 92                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0048.fastq.gz                             ||
|| Output file   : example_1h1_cell_0048.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:45, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 191                                          ||
||                      Mapped : 4 (2.1%)                                     ||
||             Uniquely mapped : 4                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 187                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0049.fastq.gz                             ||
|| Output file   : example_1h1_cell_0049.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:48, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 114                                          ||
||                      Mapped : 4 (3.5%)                                     ||
||             Uniquely mapped : 4                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 110                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0050.fastq.gz                             ||
|| Output file   : example_1h1_cell_0050.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:50, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 116                                          ||
||                      Mapped : 5 (4.3%)                                     ||
||             Uniquely mapped : 5                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 111                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0051.fastq.gz                             ||
|| Output file   : example_1h1_cell_0051.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:52, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [2,36]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 94                                           ||
||                      Mapped : 2 (2.1%)                                     ||
||             Uniquely mapped : 2                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 92                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0052.fastq.gz                             ||
|| Output file   : example_1h1_cell_0052.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:54, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 163                                          ||
||                      Mapped : 2 (1.2%)                                     ||
||             Uniquely mapped : 2                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 161                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0053.fastq.gz                             ||
|| Output file   : example_1h1_cell_0053.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:55, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [2,36]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 100                                          ||
||                      Mapped : 1 (1.0%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 99                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0054.fastq.gz                             ||
|| Output file   : example_1h1_cell_0054.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:37:58, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 115                                          ||
||                      Mapped : 2 (1.7%)                                     ||
||             Uniquely mapped : 2                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 113                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0055.fastq.gz                             ||
|| Output file   : example_1h1_cell_0055.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:00, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 130                                          ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 130                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0056.fastq.gz                             ||
|| Output file   : example_1h1_cell_0056.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:02, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 161                                          ||
||                      Mapped : 6 (3.7%)                                     ||
||             Uniquely mapped : 6                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 155                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0057.fastq.gz                             ||
|| Output file   : example_1h1_cell_0057.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:04, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 166                                          ||
||                      Mapped : 6 (3.6%)                                     ||
||             Uniquely mapped : 6                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 160                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0058.fastq.gz                             ||
|| Output file   : example_1h1_cell_0058.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:06, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 34                                           ||
||                      Mapped : 1 (2.9%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 33                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0059.fastq.gz                             ||
|| Output file   : example_1h1_cell_0059.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:08, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [2,36]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 113                                          ||
||                      Mapped : 3 (2.7%)                                     ||
||             Uniquely mapped : 3                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 110                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0060.fastq.gz                             ||
|| Output file   : example_1h1_cell_0060.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:10, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [2,36]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 116                                          ||
||                      Mapped : 1 (0.9%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 115                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0061.fastq.gz                             ||
|| Output file   : example_1h1_cell_0061.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:12, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 87                                           ||
||                      Mapped : 2 (2.3%)                                     ||
||             Uniquely mapped : 2                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 85                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0062.fastq.gz                             ||
|| Output file   : example_1h1_cell_0062.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:14, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 40                                           ||
||                      Mapped : 1 (2.5%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 39                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0063.fastq.gz                             ||
|| Output file   : example_1h1_cell_0063.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:16, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 35                                           ||
||                      Mapped : 3 (8.6%)                                     ||
||             Uniquely mapped : 3                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 32                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0064.fastq.gz                             ||
|| Output file   : example_1h1_cell_0064.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:18, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [2,36]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 143                                          ||
||                      Mapped : 1 (0.7%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 142                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0065.fastq.gz                             ||
|| Output file   : example_1h1_cell_0065.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:20, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 147                                          ||
||                      Mapped : 3 (2.0%)                                     ||
||             Uniquely mapped : 3                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 144                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0066.fastq.gz                             ||
|| Output file   : example_1h1_cell_0066.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:22, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 93                                           ||
||                      Mapped : 2 (2.2%)                                     ||
||             Uniquely mapped : 2                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 91                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0067.fastq.gz                             ||
|| Output file   : example_1h1_cell_0067.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:24, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 100                                          ||
||                      Mapped : 1 (1.0%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 99                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0068.fastq.gz                             ||
|| Output file   : example_1h1_cell_0068.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:26, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 86                                           ||
||                      Mapped : 2 (2.3%)                                     ||
||             Uniquely mapped : 2                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 84                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0069.fastq.gz                             ||
|| Output file   : example_1h1_cell_0069.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:28, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 45                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 45                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0070.fastq.gz                             ||
|| Output file   : example_1h1_cell_0070.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:30, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 94                                           ||
||                      Mapped : 1 (1.1%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 93                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0071.fastq.gz                             ||
|| Output file   : example_1h1_cell_0071.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:32, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 204                                          ||
||                      Mapped : 6 (2.9%)                                     ||
||             Uniquely mapped : 6                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 198                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0072.fastq.gz                             ||
|| Output file   : example_1h1_cell_0072.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:34, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [2,36]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 183                                          ||
||                      Mapped : 7 (3.8%)                                     ||
||             Uniquely mapped : 7                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 176                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0073.fastq.gz                             ||
|| Output file   : example_1h1_cell_0073.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:36, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 90                                           ||
||                      Mapped : 1 (1.1%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 89                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0074.fastq.gz                             ||
|| Output file   : example_1h1_cell_0074.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:38, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 78                                           ||
||                      Mapped : 1 (1.3%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 77                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0075.fastq.gz                             ||
|| Output file   : example_1h1_cell_0075.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:40, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 60                                           ||
||                      Mapped : 1 (1.7%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 59                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0076.fastq.gz                             ||
|| Output file   : example_1h1_cell_0076.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:42, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [2,36]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 131                                          ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 131                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0077.fastq.gz                             ||
|| Output file   : example_1h1_cell_0077.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:44, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [2,36]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 163                                          ||
||                      Mapped : 3 (1.8%)                                     ||
||             Uniquely mapped : 3                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 160                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0078.fastq.gz                             ||
|| Output file   : example_1h1_cell_0078.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:46, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [2,36]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 203                                          ||
||                      Mapped : 8 (3.9%)                                     ||
||             Uniquely mapped : 8                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 195                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0079.fastq.gz                             ||
|| Output file   : example_1h1_cell_0079.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:48, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [2,36]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 62                                           ||
||                      Mapped : 3 (4.8%)                                     ||
||             Uniquely mapped : 3                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 59                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0080.fastq.gz                             ||
|| Output file   : example_1h1_cell_0080.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:50, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 216                                          ||
||                      Mapped : 5 (2.3%)                                     ||
||             Uniquely mapped : 5                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 211                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0081.fastq.gz                             ||
|| Output file   : example_1h1_cell_0081.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:52, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 101                                          ||
||                      Mapped : 2 (2.0%)                                     ||
||             Uniquely mapped : 2                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 99                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0082.fastq.gz                             ||
|| Output file   : example_1h1_cell_0082.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:54, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 170                                          ||
||                      Mapped : 6 (3.5%)                                     ||
||             Uniquely mapped : 6                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 164                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0083.fastq.gz                             ||
|| Output file   : example_1h1_cell_0083.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:56, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 99                                           ||
||                      Mapped : 7 (7.1%)                                     ||
||             Uniquely mapped : 7                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 92                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0084.fastq.gz                             ||
|| Output file   : example_1h1_cell_0084.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:38:58, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 135                                          ||
||                      Mapped : 1 (0.7%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 134                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0085.fastq.gz                             ||
|| Output file   : example_1h1_cell_0085.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:39:00, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 23                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 23                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0086.fastq.gz                             ||
|| Output file   : example_1h1_cell_0086.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:39:02, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 230                                          ||
||                      Mapped : 6 (2.6%)                                     ||
||             Uniquely mapped : 6                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 224                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0087.fastq.gz                             ||
|| Output file   : example_1h1_cell_0087.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:39:04, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 96                                           ||
||                      Mapped : 7 (7.3%)                                     ||
||             Uniquely mapped : 7                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 89                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0088.fastq.gz                             ||
|| Output file   : example_1h1_cell_0088.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:39:06, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 249                                          ||
||                      Mapped : 3 (1.2%)                                     ||
||             Uniquely mapped : 3                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 246                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0089.fastq.gz                             ||
|| Output file   : example_1h1_cell_0089.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:39:08, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 144                                          ||
||                      Mapped : 5 (3.5%)                                     ||
||             Uniquely mapped : 5                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 139                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0090.fastq.gz                             ||
|| Output file   : example_1h1_cell_0090.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:39:10, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 52                                           ||
||                      Mapped : 4 (7.7%)                                     ||
||             Uniquely mapped : 4                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 48                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0091.fastq.gz                             ||
|| Output file   : example_1h1_cell_0091.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:39:12, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 127                                          ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 127                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0092.fastq.gz                             ||
|| Output file   : example_1h1_cell_0092.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:39:14, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 155                                          ||
||                      Mapped : 1 (0.6%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 154                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0093.fastq.gz                             ||
|| Output file   : example_1h1_cell_0093.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:39:16, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 225                                          ||
||                      Mapped : 10 (4.4%)                                    ||
||             Uniquely mapped : 10                                           ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 215                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0094.fastq.gz                             ||
|| Output file   : example_1h1_cell_0094.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:39:18, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [2,36]                   ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 136                                          ||
||                      Mapped : 1 (0.7%)                                     ||
||             Uniquely mapped : 1                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 135                                          ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0095.fastq.gz                             ||
|| Output file   : example_1h1_cell_0095.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:39:20, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 9                                            ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 9                                            ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//


        ==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
       Rsubread 1.33.33

//================================= setting ==================================\\
||                                                                            ||
|| Function      : Read alignment (RNA-Seq)                                   ||
|| Input file    : example_1h1_cell_0096.fastq.gz                             ||
|| Output file   : example_1h1_cell_0096.BAM (BAM)                            ||
|| Index name    : GRCm38_MT                                                  ||
||                                                                            ||
||                    ------------------------------------                    ||
||                                                                            ||
||                               Threads : 1                                  ||
||                          Phred offset : 33                                 ||
||                             Min votes : 3 / 10                             ||
||                        Max mismatches : 3                                  ||
||                      Max indel length : 5                                  ||
||            Report multi-mapping reads : yes                                ||
|| Max alignments per multi-mapping read : 1                                  ||
||                                                                            ||
\\============================================================================//

//================= Running (08-Apr-2019 22:39:22, pid=3767) =================\\
||                                                                            ||
|| The input file contains base space reads.                                  ||
|| The range of Phred scores observed in the data is [14,36]                  ||
|| Load the 1-th index block...                                               ||
||                                                                            ||
||                           Completed successfully.                          ||
||                                                                            ||
\\====================================    ====================================//

//================================   Summary =================================\\
||                                                                            ||
||                 Total reads : 13                                           ||
||                      Mapped : 0 (0.0%)                                     ||
||             Uniquely mapped : 0                                            ||
||               Multi-mapping : 0                                            ||
||                                                                            ||
||                    Unmapped : 13                                           ||
||                                                                            ||
||                      Indels : 0                                            ||
||                                                                            ||
||                Running time : 0.0 minutes                                  ||
||                                                                            ||
\\============================================================================//

Quitting from lines 70-98 (scruff.Rmd) 
Error: processing vignette 'scruff.Rmd' failed with diagnostics:
BiocParallel errors
  element index: 1, 2, 3, 4, 5, 6, ...
  first error: a character vector argument expected
Execution halted