Back to Multiple platform build/check report for BioC 3.9
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

INSTALL report for savR on tokay2

This page was generated on 2019-04-09 12:15:55 -0400 (Tue, 09 Apr 2019).

Package 1428/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
savR 1.21.0
R. Brent Calder
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/savR
Branch: master
Last Commit: dc0cd3d
Last Changed Date: 2018-10-30 11:54:32 -0400 (Tue, 30 Oct 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: savR
Version: 1.21.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/savR_1.21.0.tar.gz && rm -rf savR.buildbin-libdir && mkdir savR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=savR.buildbin-libdir savR_1.21.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL savR_1.21.0.zip && rm savR_1.21.0.tar.gz savR_1.21.0.zip
StartedAt: 2019-04-08 18:51:09 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 18:52:06 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 56.3 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/savR_1.21.0.tar.gz && rm -rf savR.buildbin-libdir && mkdir savR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=savR.buildbin-libdir savR_1.21.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL savR_1.21.0.zip && rm savR_1.21.0.tar.gz savR_1.21.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  392k  100  392k    0     0  5760k      0 --:--:-- --:--:-- --:--:-- 6332k

install for i386

* installing *source* package 'savR' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'savR'
    finding HTML links ... done
    buildReports                            html  
    clusterQualityGtN                       html  
    clusters                                html  
    correctedIntensities                    html  
    cycles                                  html  
    directions                              html  
    errorMetrics                            html  
    extractionMetrics                       html  
    flowcellLayout                          html  
    illuminaFlowCellLayout-class            html  
    illuminaRead-class                      html  
    location                                html  
    pfBoxplot                               html  
    pfClusters                              html  
    plotFWHM                                html  
    plotIntensity                           html  
    plotQGT30                               html  
    qualityHeatmap                          html  
    qualityMetrics                          html  
    reads                                   html  
    run                                     html  
    savCorrectedIntensityFormat-class       html  
    savData-class                           html  
    savErrorFormat-class                    html  
    savExtractionFormat-class               html  
    savFormat-class                         html  
    savProject-class                        html  
    savQualityFormat-class                  html  
    savQualityFormatV5-class                html  
    savR-package                            html  
    savR                                    html  
    savTileFormat-class                     html  
    tileMetrics                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'savR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'savR' as savR_1.21.0.zip
* DONE (savR)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'savR' successfully unpacked and MD5 sums checked