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INSTALL report for sapFinder on tokay2

This page was generated on 2019-04-09 12:18:03 -0400 (Tue, 09 Apr 2019).

Package 1427/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
sapFinder 1.21.1
Shaohang Xu , Bo Wen
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/sapFinder
Branch: master
Last Commit: d1bd8be
Last Changed Date: 2019-01-04 13:48:05 -0400 (Fri, 04 Jan 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: sapFinder
Version: 1.21.1
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/sapFinder_1.21.1.tar.gz && rm -rf sapFinder.buildbin-libdir && mkdir sapFinder.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sapFinder.buildbin-libdir sapFinder_1.21.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL sapFinder_1.21.1.zip && rm sapFinder_1.21.1.tar.gz sapFinder_1.21.1.zip
StartedAt: 2019-04-08 18:42:16 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 18:43:45 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 88.4 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/sapFinder_1.21.1.tar.gz && rm -rf sapFinder.buildbin-libdir && mkdir sapFinder.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sapFinder.buildbin-libdir sapFinder_1.21.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL sapFinder_1.21.1.zip && rm sapFinder_1.21.1.tar.gz sapFinder_1.21.1.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 4483k  100 4483k    0     0  15.3M      0 --:--:-- --:--:-- --:--:-- 15.6M

install for i386

* installing *source* package 'sapFinder' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c dataHandle.cpp -o dataHandle.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o sapFinder.dll tmp.def dataHandle.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/sapFinder.buildbin-libdir/00LOCK-sapFinder/00new/sapFinder/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'sapFinder'
    finding HTML links ... done
    dbCreator                               html  
    easyRun                                 html  
    parserGear                              html  
    reportCreator                           html  
    runTandem                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'sapFinder' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c dataHandle.cpp -o dataHandle.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o sapFinder.dll tmp.def dataHandle.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/sapFinder.buildbin-libdir/sapFinder/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sapFinder' as sapFinder_1.21.1.zip
* DONE (sapFinder)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'sapFinder' successfully unpacked and MD5 sums checked