Back to Multiple platform build/check report for BioC 3.9
ABCDEFGHIJKLMNOPQ[R]STUVWXYZ

INSTALL report for rnaSeqMap on malbec2

This page was generated on 2019-04-09 11:29:30 -0400 (Tue, 09 Apr 2019).

Package 1371/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rnaSeqMap 2.41.1
Michal Okoniewski
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/rnaSeqMap
Branch: master
Last Commit: 64e27e7
Last Changed Date: 2019-01-04 13:47:13 -0400 (Fri, 04 Jan 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64 [ OK ] OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: rnaSeqMap
Version: 2.41.1
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL rnaSeqMap
StartedAt: 2019-04-08 18:24:14 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 18:24:56 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 41.8 seconds
RetCode: 0
Status:  OK 

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL rnaSeqMap
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘rnaSeqMap’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG   -I/usr/local/include  -fpic  -g -O2  -Wall -c Rinit.c -o Rinit.o
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG   -I/usr/local/include  -fpic  -g -O2  -Wall -c gcoverage.c -o gcoverage.o
gcoverage.c: In function ‘gcoverage’:
gcoverage.c:7:31: warning: variable ‘nc’ set but not used [-Wunused-but-set-variable]
     int  start, i, j, na, nb, nc, nwyn;
                               ^˜
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG   -I/usr/local/include  -fpic  -g -O2  -Wall -c ghistogram.c -o ghistogram.o
ghistogram.c: In function ‘ghistogram’:
ghistogram.c:9:10: warning: variable ‘xa’ set but not used [-Wunused-but-set-variable]
     int *xa, *xb, *xab;
          ^˜
ghistogram.c:8:20: warning: variable ‘nb’ set but not used [-Wunused-but-set-variable]
  int i, j, l , na, nb, nab, Is;
                    ^˜
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG   -I/usr/local/include  -fpic  -g -O2  -Wall -c regionmining.c -o regionmining.o
regionmining.c: In function ‘regionmining’:
regionmining.c:22:18: warning: variable ‘start’ set but not used [-Wunused-but-set-variable]
     int current, start, param, minsup,*xwyn;
                  ^˜˜˜˜
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG   -I/usr/local/include  -fpic  -g -O2  -Wall -c splicingind.c -o splicingind.o
splicingind.c: In function ‘splicingind’:
splicingind.c:8:13: warning: variable ‘nb’ set but not used [-Wunused-but-set-variable]
  int j, na, nb, nab;
             ^˜
gcc -shared -L/home/biocbuild/bbs-3.9-bioc/R/lib -L/usr/local/lib -o rnaSeqMap.so Rinit.o gcoverage.o ghistogram.o regionmining.o splicingind.o -L/home/biocbuild/bbs-3.9-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.9-bioc/R/library/00LOCK-rnaSeqMap/00new/rnaSeqMap/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rnaSeqMap)