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INSTALL report for rhdf5client on malbec2

This page was generated on 2019-04-09 11:49:23 -0400 (Tue, 09 Apr 2019).

Package 1345/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rhdf5client 1.5.1
Samuela Pollack
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/rhdf5client
Branch: master
Last Commit: 3d1161e
Last Changed Date: 2018-12-03 16:11:13 -0400 (Mon, 03 Dec 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64 [ OK ] OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK 

Summary

Package: rhdf5client
Version: 1.5.1
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL rhdf5client
StartedAt: 2019-04-08 18:15:20 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 18:15:44 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 23.9 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL rhdf5client
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘rhdf5client’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG   -I/usr/local/include  -fpic  -g -O2  -Wall -c extract.c -o extract.o
extract.c: In function ‘extractBin’:
extract.c:101:42: warning: ‘rdp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
     A[ia] = (Rf_isReal(resvec_sexp) ? rdp[ib] : rip[ib]);
                                          ^
extract.c:101:52: warning: ‘rip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
     A[ia] = (Rf_isReal(resvec_sexp) ? rdp[ib] : rip[ib]);
                                                    ^
gcc -shared -L/home/biocbuild/bbs-3.9-bioc/R/lib -L/usr/local/lib -o rhdf5client.so extract.o -L/home/biocbuild/bbs-3.9-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.9-bioc/R/library/00LOCK-rhdf5client/00new/rhdf5client/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rhdf5client)