Back to Multiple platform build/check report for BioC 3.9
ABCDEFGHIJKLMNO[P]QRSTUVWXYZ

BUILD BIN report for proFIA on merida2

This page was generated on 2019-04-09 13:34:16 -0400 (Tue, 09 Apr 2019).

Package 1230/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
proFIA 1.9.1
Alexis Delabriere
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/proFIA
Branch: master
Last Commit: 9d8ca9e
Last Changed Date: 2019-04-08 15:55:27 -0400 (Mon, 08 Apr 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS [ OK ]

Summary

Package: proFIA
Version: 1.9.1
Command: rm -rf proFIA.buildbin-libdir && mkdir proFIA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh proFIA_1.9.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R proFIA.buildbin-libdir
StartedAt: 2019-04-09 06:11:27 -0400 (Tue, 09 Apr 2019)
EndedAt: 2019-04-09 06:12:46 -0400 (Tue, 09 Apr 2019)
EllapsedTime: 78.7 seconds
RetCode: 0
Status:  OK 
PackageFile: proFIA_1.9.1.tgz
PackageFileSize: 2.299 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf proFIA.buildbin-libdir && mkdir proFIA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh proFIA_1.9.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R proFIA.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=proFIA.buildbin-libdir proFIA_1.9.1.tar.gz'
>>>>>>> 

* installing *source* package ‘proFIA’ ...
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c FIABandsExtractionCentroid.c -o FIABandsExtractionCentroid.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c UtilFunc.c -o UtilFunc.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c fastMatchPpm.c -o fastMatchPpm.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o proFIA.so FIABandsExtractionCentroid.o UtilFunc.o fastMatchPpm.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.9-bioc/meat/proFIA.buildbin-libdir/proFIA/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (proFIA)


>>>>>>> 
>>>>>>> FIXING LINKS FOR proFIA.buildbin-libdir/proFIA/libs//proFIA.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "proFIA.buildbin-libdir/proFIA/libs//proFIA.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "proFIA.buildbin-libdir/proFIA/libs//proFIA.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "proFIA.buildbin-libdir/proFIA/libs//proFIA.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "proFIA.buildbin-libdir/proFIA/libs//proFIA.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "proFIA.buildbin-libdir/proFIA/libs//proFIA.so"