Package: philr

Version: 1.9.1

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/philr_1.9.1.tar.gz && rm -rf philr.buildbin-libdir && mkdir philr.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=philr.buildbin-libdir philr_1.9.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL philr_1.9.1.zip && rm philr_1.9.1.tar.gz philr_1.9.1.zip

StartedAt: 2019-04-08 18:59:02 -0400 (Mon, 08 Apr 2019)

EndedAt: 2019-04-08 18:59:57 -0400 (Mon, 08 Apr 2019)

EllapsedTime: 55.7 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/philr_1.9.1.tar.gz && rm -rf philr.buildbin-libdir && mkdir philr.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=philr.buildbin-libdir philr_1.9.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL philr_1.9.1.zip && rm philr_1.9.1.tar.gz philr_1.9.1.zip
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install for i386

* installing *source* package 'philr' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'philr'
    finding HTML links ... done
    annotate_balance                        html  
    buildilrBasep                           html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUtVWLY/R.INSTALL12544d296de4/philr/man/buildilrBasep.Rd:33: file link 'gsi.buildilrBase' in package 'compositions' does not exist and so has been treated as a topic
    calculate.blw                           html  
    convert_to_long                         html  
    g.colMeans                              html  
    g.rowMeans                              html  
    mean_dist_to_tips                       html  
    miniclo                                 html  
    name.balance                            html  
    name_nodenumber_conversion              html  
    named_rtree                             html  
    philr                                   html  
    philrInv                                html  
    phylo2sbp                               html  
    shift                                   html  
    weighted_clr                            html  
    weighted_ilr                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'philr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'philr' as philr_1.9.1.zip
* DONE (philr)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'philr' successfully unpacked and MD5 sums checked