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INSTALL report for phenopath on tokay2

This page was generated on 2019-04-09 12:31:39 -0400 (Tue, 09 Apr 2019).

Package 1180/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
phenopath 1.7.2
Kieran Campbell
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/phenopath
Branch: master
Last Commit: de6847c
Last Changed Date: 2019-01-18 13:38:22 -0400 (Fri, 18 Jan 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: phenopath
Version: 1.7.2
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/phenopath_1.7.2.tar.gz && rm -rf phenopath.buildbin-libdir && mkdir phenopath.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=phenopath.buildbin-libdir phenopath_1.7.2.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL phenopath_1.7.2.zip && rm phenopath_1.7.2.tar.gz phenopath_1.7.2.zip
StartedAt: 2019-04-08 19:46:27 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 19:47:43 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 75.9 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/phenopath_1.7.2.tar.gz && rm -rf phenopath.buildbin-libdir && mkdir phenopath.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=phenopath.buildbin-libdir phenopath_1.7.2.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL phenopath_1.7.2.zip && rm phenopath_1.7.2.tar.gz phenopath_1.7.2.zip
###
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100  426k  100  426k    0     0  7431k      0 --:--:-- --:--:-- --:--:-- 8356k

install for i386

* installing *source* package 'phenopath' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c cavi.cpp -o cavi.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o phenopath.dll tmp.def RcppExports.o cavi.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/phenopath.buildbin-libdir/00LOCK-phenopath/00new/phenopath/libs/i386
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'phenopath'
    finding HTML links ... done
    clvm                                    html  
    interaction_effects                     html  
    interaction_sds                         html  
    interactions                            html  
    phenopath                               html  
    finding level-2 HTML links ... done

    plot_elbo                               html  
    print.phenopath_fit                     html  
    sample_fns                              html  
    scale_vec                               html  
    significant_interactions                html  
    simulate_one_gene                       html  
    simulate_phenopath                      html  
    trajectory                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'phenopath' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c cavi.cpp -o cavi.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o phenopath.dll tmp.def RcppExports.o cavi.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/phenopath.buildbin-libdir/phenopath/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'phenopath' as phenopath_1.7.2.zip
* DONE (phenopath)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'phenopath' successfully unpacked and MD5 sums checked