Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 11:50:14 -0400 (Tue, 09 Apr 2019).
Package 1173/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
perturbatr 1.3.1 Simon Dirmeier
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: perturbatr |
Version: 1.3.1 |
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:perturbatr.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings perturbatr_1.3.1.tar.gz |
StartedAt: 2019-04-09 02:39:15 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 02:44:54 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 339.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: perturbatr.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:perturbatr.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings perturbatr_1.3.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/perturbatr.Rcheck’ * using R Under development (unstable) (2019-03-18 r76245) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘perturbatr/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘perturbatr’ version ‘1.3.1’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘perturbatr’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed bootstrap 60.553 0.035 60.627 HMAnalysedPerturbationData-class 6.553 0.080 6.633 graph-methods 6.602 0.016 6.619 rnaiscreen 5.748 0.012 5.761 nestedGeneEffects-methods 5.473 0.036 5.511 hm-methods 5.414 0.036 5.449 params-methods 5.356 0.032 5.389 NetworkAnalysedPerturbationData-class 5.299 0.040 5.357 isBootstrapped-methods 5.125 0.032 5.160 geneEffects-methods 5.063 0.036 5.111 diffuse-methods 5.063 0.028 5.095 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
perturbatr.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL perturbatr ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘perturbatr’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (perturbatr)
perturbatr.Rcheck/tests/testthat.Rout
R Under development (unstable) (2019-03-18 r76245) -- "Unsuffered Consequences" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > # perturbatr: analysis of high-throughput gene perturbation screens > # > # Copyright (C) 2018 Simon Dirmeier > # > # This file is part of perturbatr > # > # perturbatr is free software: you can redistribute it and/or modify > # it under the terms of the GNU General Public License as published by > # the Free Software Foundation, either version 3 of the License, or > # (at your option) any later version. > # > # perturbatr is distributed in the hope that it will be useful, > # but WITHOUT ANY WARRANTY; without even the implied warranty of > # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the > # GNU General Public License for more details. > # > # You should have received a copy of the GNU General Public License > # along with perturbatr If not, see <http://www.gnu.org/licenses/>. > > > library(testthat) > library(perturbatr) Attaching package: 'perturbatr' The following object is masked from 'package:stats': filter > > test_check("perturbatr") ══ testthat results ═══════════════════════════════════════════════════════════ OK: 44 SKIPPED: 0 FAILED: 0 > > proc.time() user system elapsed 133.224 0.249 133.521
perturbatr.Rcheck/perturbatr-Ex.timings
name | user | system | elapsed | |
HMAnalysedPerturbationData-class | 6.553 | 0.080 | 6.633 | |
NetworkAnalysedPerturbationData-class | 5.299 | 0.040 | 5.357 | |
PerturbationData-class | 0.009 | 0.000 | 0.008 | |
bootstrap | 60.553 | 0.035 | 60.627 | |
dataSet-methods | 0.620 | 0.020 | 0.641 | |
diffuse-methods | 5.063 | 0.028 | 5.095 | |
filter-methods | 0.370 | 0.012 | 0.383 | |
geneEffects-methods | 5.063 | 0.036 | 5.111 | |
graph-methods | 6.602 | 0.016 | 6.619 | |
hm-methods | 5.414 | 0.036 | 5.449 | |
inference-methods | 4.735 | 0.024 | 4.760 | |
isBootstrapped-methods | 5.125 | 0.032 | 5.160 | |
modelFit-methods | 4.379 | 0.028 | 4.408 | |
nestedGeneEffects-methods | 5.473 | 0.036 | 5.511 | |
params-methods | 5.356 | 0.032 | 5.389 | |
rbind.PerturbationData | 0.573 | 0.020 | 0.593 | |
rnaiscreen | 5.748 | 0.012 | 5.761 | |