Laurent Gatto
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/pRoloc |
| Branch: master |
| Last Commit: 12e9698 |
| Last Changed Date: 2019-03-15 05:37:41 -0400 (Fri, 15 Mar 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 11:34:07 -0400 (Tue, 09 Apr 2019).
| Package 1234/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| pRoloc 1.23.2 Laurent Gatto
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | [ ERROR ] | skipped | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped |
| Package: pRoloc |
| Version: 1.23.2 |
| Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data pRoloc |
| StartedAt: 2019-04-08 19:56:41 -0400 (Mon, 08 Apr 2019) |
| EndedAt: 2019-04-08 20:03:11 -0400 (Mon, 08 Apr 2019) |
| EllapsedTime: 389.9 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data pRoloc ### ############################################################################## ############################################################################## * checking for file ‘pRoloc/DESCRIPTION’ ... OK * preparing ‘pRoloc’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘v01-pRoloc-tutorial.Rmd’ using rmarkdown Warning: The label(s) fig:params not found Warning: The label(s) fig:params not found --- finished re-building ‘v01-pRoloc-tutorial.Rmd’ --- re-building ‘v02-pRoloc-ml.Rmd’ using rmarkdown Warning in lapply(X = X, FUN = FUN, ...) : NaNs found in 'precision' with hyperparameters cost:1 sigma:1. Warning in lapply(X = X, FUN = FUN, ...) : NaNs found in 'precision' with hyperparameters cost:2 sigma:1. --- finished re-building ‘v02-pRoloc-ml.Rmd’ --- re-building ‘v03-pRoloc-bayesian.Rmd’ using rmarkdown --- finished re-building ‘v03-pRoloc-bayesian.Rmd’ --- re-building ‘v04-pRoloc-goannotations.Rmd’ using rmarkdown Loading required namespace: GO.db Retaining 80 out of 549 in GOAnnotations Retaining 79 out of 80 in GOAnnotations --- finished re-building ‘v04-pRoloc-goannotations.Rmd’ --- re-building ‘v05-pRoloc-transfer-learning.Rmd’ using rmarkdown Quitting from lines 143-147 (v05-pRoloc-transfer-learning.Rmd) Error: processing vignette 'v05-pRoloc-transfer-learning.Rmd' failed with diagnostics: biomaRt error: looks like we're connecting to incompatible version of BioMart suite. --- failed re-building ‘v05-pRoloc-transfer-learning.Rmd’ SUMMARY: processing the following file failed: ‘v05-pRoloc-transfer-learning.Rmd’ Error: Vignette re-building failed. Execution halted