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INSTALL report for oppar on tokay2

This page was generated on 2019-04-09 12:26:28 -0400 (Tue, 09 Apr 2019).

Package 1124/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
oppar 1.11.0
Soroor Hediyeh zadeh
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/oppar
Branch: master
Last Commit: 989cc36
Last Changed Date: 2018-10-30 11:54:36 -0400 (Tue, 30 Oct 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: oppar
Version: 1.11.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/oppar_1.11.0.tar.gz && rm -rf oppar.buildbin-libdir && mkdir oppar.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=oppar.buildbin-libdir oppar_1.11.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL oppar_1.11.0.zip && rm oppar_1.11.0.tar.gz oppar_1.11.0.zip
StartedAt: 2019-04-08 18:55:59 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 18:56:40 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 41.1 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/oppar_1.11.0.tar.gz && rm -rf oppar.buildbin-libdir && mkdir oppar.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=oppar.buildbin-libdir oppar_1.11.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL oppar_1.11.0.zip && rm oppar_1.11.0.tar.gz oppar_1.11.0.zip
###
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100 3438k  100 3438k    0     0  32.1M      0 --:--:-- --:--:-- --:--:-- 34.6M

install for i386

* installing *source* package 'oppar' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c R_init_oppar.c -o R_init_oppar.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c kernel_estimation.c -o kernel_estimation.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c ks_test.c -o ks_test.o
ks_test.c: In function 'ks_sample':
ks_test.c:22:9: warning: unused variable 'mx_value' [-Wunused-variable]
  double mx_value = 0.0;
         ^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o oppar.dll tmp.def R_init_oppar.o kernel_estimation.o ks_test.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/oppar.buildbin-libdir/00LOCK-oppar/00new/oppar/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'oppar'
    finding HTML links ... done
    OPPARList-class                         html  
    bcm                                     html  
    eset                                    html  
    getSampleOutlier                        html  
    getSubtypeProbes                        html  
    gsva                                    html  
    maupin                                  html  
    opa                                     html  
    oppar                                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'oppar' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c R_init_oppar.c -o R_init_oppar.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c kernel_estimation.c -o kernel_estimation.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c ks_test.c -o ks_test.o
ks_test.c: In function 'ks_sample':
ks_test.c:22:9: warning: unused variable 'mx_value' [-Wunused-variable]
  double mx_value = 0.0;
         ^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o oppar.dll tmp.def R_init_oppar.o kernel_estimation.o ks_test.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/oppar.buildbin-libdir/oppar/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'oppar' as oppar_1.11.0.zip
* DONE (oppar)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'oppar' successfully unpacked and MD5 sums checked