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CHECK report for metabomxtr on tokay2

This page was generated on 2019-04-09 12:20:40 -0400 (Tue, 09 Apr 2019).

Package 941/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
metabomxtr 1.17.1
Michael Nodzenski
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/metabomxtr
Branch: master
Last Commit: 47e5a20
Last Changed Date: 2019-01-04 13:37:55 -0400 (Fri, 04 Jan 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: metabomxtr
Version: 1.17.1
Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:metabomxtr.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings metabomxtr_1.17.1.tar.gz
StartedAt: 2019-04-09 04:06:49 -0400 (Tue, 09 Apr 2019)
EndedAt: 2019-04-09 04:10:48 -0400 (Tue, 09 Apr 2019)
EllapsedTime: 239.0 seconds
RetCode: 0
Status:  OK  
CheckDir: metabomxtr.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:metabomxtr.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings metabomxtr_1.17.1.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/metabomxtr.Rcheck'
* using R Under development (unstable) (2019-03-09 r76216)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'metabomxtr/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'metabomxtr' version '1.17.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'metabomxtr' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
metabplot          1.17   0.11    8.67
metabomxtr-package 0.42   0.04   18.34
mxtrmod            0.16   0.04   18.49
mixnorm            0.11   0.03    8.45
mxtrmodLRT         0.01   0.01   10.03
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
metabplot          1.04   0.10    9.18
metabomxtr-package 0.71   0.04   20.53
mxtrmod            0.18   0.02   19.79
mixnorm            0.10   0.04    8.64
mxtrmodLRT         0.04   0.01   11.39
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

metabomxtr.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/metabomxtr_1.17.1.tar.gz && rm -rf metabomxtr.buildbin-libdir && mkdir metabomxtr.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metabomxtr.buildbin-libdir metabomxtr_1.17.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL metabomxtr_1.17.1.zip && rm metabomxtr_1.17.1.tar.gz metabomxtr_1.17.1.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 60153  100 60153    0     0   959k      0 --:--:-- --:--:-- --:--:-- 1087k

install for i386

* installing *source* package 'metabomxtr' ...
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'metabomxtr'
    finding HTML links ... done
    addBatchMeans                           html  
    addOutlierInfo                          html  
    allMissingLevels                        html  
    anyMissingLevels                        html  
    euMetabCData                            html  
    euMetabData                             html  
    idMissingLevels                         html  
    metabdata                               html  
    metabomxtr-package                      html  
    metabplot                               html  
    mixnorm                                 html  
    mxtrmod                                 html  
    mxtrmodLL                               html  
    mxtrmodLRT                              html  
    mxtrmodstart                            html  
    removeAllMissingCatVar                  html  
    removeMissingLevels                     html  
    runMxtrmod                              html  
    xdesign-methods                         html  
    yvals-methods                           html  
    zdesign-methods                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'metabomxtr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'metabomxtr' as metabomxtr_1.17.1.zip
* DONE (metabomxtr)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'metabomxtr' successfully unpacked and MD5 sums checked

Tests output


Example timings

metabomxtr.Rcheck/examples_i386/metabomxtr-Ex.timings

nameusersystemelapsed
addBatchMeans0.030.000.03
addOutlierInfo000
allMissingLevels0.000.020.02
anyMissingLevels000
idMissingLevels0.020.000.02
metabomxtr-package 0.42 0.0418.34
metabplot1.170.118.67
mixnorm0.110.038.45
mxtrmod 0.16 0.0418.49
mxtrmodLL000
mxtrmodLRT 0.01 0.0110.03
mxtrmodstart0.020.000.02
removeAllMissingCatVar000
removeMissingLevels0.020.000.01
runMxtrmod1.040.021.06

metabomxtr.Rcheck/examples_x64/metabomxtr-Ex.timings

nameusersystemelapsed
addBatchMeans0.040.000.04
addOutlierInfo000
allMissingLevels0.000.020.02
anyMissingLevels000
idMissingLevels000
metabomxtr-package 0.71 0.0420.53
metabplot1.040.109.18
mixnorm0.100.048.64
mxtrmod 0.18 0.0219.79
mxtrmodLL000
mxtrmodLRT 0.04 0.0111.39
mxtrmodstart000
removeAllMissingCatVar000
removeMissingLevels0.000.020.01
runMxtrmod1.430.001.42