Anand Mayakonda
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/maftools |
| Branch: master |
| Last Commit: 96a70f7 |
| Last Changed Date: 2019-03-31 11:48:18 -0400 (Sun, 31 Mar 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 12:26:56 -0400 (Tue, 09 Apr 2019).
| Package 890/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| maftools 1.9.30 Anand Mayakonda
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: maftools |
| Version: 1.9.30 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/maftools_1.9.30.tar.gz && rm -rf maftools.buildbin-libdir && mkdir maftools.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=maftools.buildbin-libdir maftools_1.9.30.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL maftools_1.9.30.zip && rm maftools_1.9.30.tar.gz maftools_1.9.30.zip |
| StartedAt: 2019-04-08 20:39:52 -0400 (Mon, 08 Apr 2019) |
| EndedAt: 2019-04-08 20:41:02 -0400 (Mon, 08 Apr 2019) |
| EllapsedTime: 69.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/maftools_1.9.30.tar.gz && rm -rf maftools.buildbin-libdir && mkdir maftools.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=maftools.buildbin-libdir maftools_1.9.30.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL maftools_1.9.30.zip && rm maftools_1.9.30.tar.gz maftools_1.9.30.zip
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install for i386
* installing *source* package 'maftools' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'maftools'
finding HTML links ... done
GISTIC-class html
MAF-class html
OncogenicPathways html
PlotOncogenicPathways html
annovarToMaf html
clinicalEnrichment html
coOncoplot html
drugInteractions html
extractSignatures html
finding level-2 HTML links ... done
forestPlot html
geneCloud html
genesToBarcodes html
genotypeMatrix html
getClinicalData html
getCytobandSummary html
getFields html
getGeneSummary html
getSampleSummary html
gisticBubblePlot html
gisticChromPlot html
gisticOncoPlot html
icgcSimpleMutationToMAF html
inferHeterogeneity html
lollipopPlot html
lollipopPlot2 html
mafCompare html
mafSummary html
mafSurvival html
math.score html
merge_mafs html
mutCountMatrix html
oncodrive html
oncoplot html
oncostrip html
oncotate html
pancanComparison html
pfamDomains html
plotApobecDiff html
plotCBSsegments html
plotClusters html
plotEnrichmentResults html
plotOncodrive html
plotSignatures html
plotTiTv html
plotVaf html
plotmafSummary html
prepareMutSig html
rainfallPlot html
read.maf html
readGistic html
signatureEnrichment html
somaticInteractions html
subsetMaf html
tcgaCompare html
titv html
trinucleotideMatrix html
write.GisticSummary html
write.mafSummary html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'maftools' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'maftools' as maftools_1.9.30.zip
* DONE (maftools)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'maftools' successfully unpacked and MD5 sums checked