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INSTALL report for icetea on tokay2

This page was generated on 2019-04-09 12:40:17 -0400 (Tue, 09 Apr 2019).

Package 774/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
icetea 1.1.1
Vivek Bhardwaj
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/icetea
Branch: master
Last Commit: e7839c0
Last Changed Date: 2019-03-23 09:13:23 -0400 (Sat, 23 Mar 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  ERROR 
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  ERROR  OK 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  ERROR  OK 
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  ERROR  OK 

Summary

Package: icetea
Version: 1.1.1
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/icetea_1.1.1.tar.gz && rm -rf icetea.buildbin-libdir && mkdir icetea.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=icetea.buildbin-libdir icetea_1.1.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL icetea_1.1.1.zip && rm icetea_1.1.1.tar.gz icetea_1.1.1.zip
StartedAt: 2019-04-08 20:33:26 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 20:35:22 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 115.7 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/icetea_1.1.1.tar.gz && rm -rf icetea.buildbin-libdir && mkdir icetea.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=icetea.buildbin-libdir icetea_1.1.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL icetea_1.1.1.zip && rm icetea_1.1.1.tar.gz icetea_1.1.1.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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100 1337k  100 1337k    0     0  18.4M      0 --:--:-- --:--:-- --:--:-- 20.4M

install for i386

* installing *source* package 'icetea' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'icetea'
    finding HTML links ... done
    ResizeReads                             html  
    activeChrs                              html  
    annotateTSS                             html  
    check_capSet                            html  
    demultiplexFASTQ                        html  
    detectDiffTSS                           html  
    finding level-2 HTML links ... done

    detectTSS                               html  
    exampleCSobject                         html  
    exportTSS                               html  
    filterDuplicates                        html  
    filterDups                              html  
    fitDiffTSS                              html  
    getBamFlags                             html  
    getChromBins                            html  
    getChromWindows                         html  
    getGeneCounts                           html  
    getMCparams                             html  
    getNormFactors                          html  
    get_newfastq                            html  
    getranks                                html  
    mapCaps                                 html  
    newCapSet                               html  
    numReadsInBed                           html  
    plotPrecision                           html  
    plotReadStats                           html  
    plotTSSprecision                        html  
    sampleInfo                              html  
    splitBAM_byIndex                        html  
    splitBAM_byRepindex                     html  
    split_fastq                             html  
    splitranks                              html  
    strandBinCounts                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'icetea' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'icetea' as icetea_1.1.1.zip
* DONE (icetea)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'icetea' successfully unpacked and MD5 sums checked