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INSTALL report for iCNV on tokay2

This page was generated on 2019-04-09 12:37:14 -0400 (Tue, 09 Apr 2019).

Package 778/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
iCNV 1.3.1
Zilu Zhou
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/iCNV
Branch: master
Last Commit: 611c24b
Last Changed Date: 2019-01-04 13:35:56 -0400 (Fri, 04 Jan 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK 

Summary

Package: iCNV
Version: 1.3.1
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/iCNV_1.3.1.tar.gz && rm -rf iCNV.buildbin-libdir && mkdir iCNV.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iCNV.buildbin-libdir iCNV_1.3.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL iCNV_1.3.1.zip && rm iCNV_1.3.1.tar.gz iCNV_1.3.1.zip
StartedAt: 2019-04-08 20:13:59 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 20:16:03 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 124.1 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/iCNV_1.3.1.tar.gz && rm -rf iCNV.buildbin-libdir && mkdir iCNV.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iCNV.buildbin-libdir iCNV_1.3.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL iCNV_1.3.1.zip && rm iCNV_1.3.1.tar.gz iCNV_1.3.1.zip
###
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  7 1218k    7 98304    0     0   442k      0  0:00:02 --:--:--  0:00:02  454k
100 1218k  100 1218k    0     0  4301k      0 --:--:-- --:--:-- --:--:-- 4383k

install for i386

* installing *source* package 'iCNV' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Note: break used in wrong context: no loop is visible 
** help
*** installing help indices
  converting help for package 'iCNV'
    finding HTML links ... done
    bambaf_from_vcf                         html  
    bed_generator                           html  
    chr                                     html  
    filenm                                  html  
    get_array_input                         html  
    iCNV_detection                          html  
    icnv_output_to_gb                       html  
    icnv_res0                               html  
    ngs_baf                                 html  
    ngs_baf.chr                             html  
    ngs_baf.id                              html  
    ngs_baf.nm                              html  
    ngs_baf.pos                             html  
    ngs_plr                                 html  
    ngs_plr.pos                             html  
    normObj                                 html  
    output_list                             html  
    plotHMMscore                            html  
    plot_intensity                          html  
    plotindi                                html  
    projname                                html  
    qcObj                                   html  
    sampname                                html  
    sampname_qc                             html  
    snp_baf                                 html  
    snp_baf.pos                             html  
    snp_lrr                                 html  
    snp_lrr.pos                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'iCNV' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'iCNV' as iCNV_1.3.1.zip
* DONE (iCNV)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'iCNV' successfully unpacked and MD5 sums checked