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INSTALL report for hapFabia on celaya2

This page was generated on 2019-04-09 13:05:46 -0400 (Tue, 09 Apr 2019).

Package 729/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
hapFabia 1.25.1
Andreas Mitterecker
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/hapFabia
Branch: master
Last Commit: f020115
Last Changed Date: 2019-01-23 11:22:23 -0400 (Wed, 23 Jan 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: hapFabia
Version: 1.25.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL hapFabia
StartedAt: 2019-04-08 18:07:09 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 18:07:46 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 37.8 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL hapFabia
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘hapFabia’ ...
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -fPIC  -Wall -g -O2  -c interfaceR.c -o interfaceR.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -fPIC  -Wall -g -O2  -c split_sparse_matrixB.c -o split_sparse_matrixB.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -fPIC  -Wall -g -O2  -c vcftoFABIAB.c -o vcftoFABIAB.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o hapFabia.so interfaceR.o split_sparse_matrixB.o vcftoFABIAB.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
clang -c ./commandLine/split_sparse_matrix.c -o ./commandLine/split_sparse_matrix.o -Wall -g -O2 
clang -c split_sparse_matrixB.c -o ./commandLine/split_sparse_matrixB.o -Wall -g -O2 
clang ./commandLine/split_sparse_matrix.o ./commandLine/split_sparse_matrixB.o -o ./commandLine/split_sparse_matrix
mv ./commandLine/split_sparse_matrix ../inst/commandLine/
clang -c ./commandLine/vcftoFABIA.c -o ./commandLine/vcftoFABIA.o -Wall -g -O2 
clang -c vcftoFABIAB.c -o ./commandLine/vcftoFABIAB.o -Wall -g -O2 
clang ./commandLine/vcftoFABIA.o ./commandLine/vcftoFABIAB.o -o ./commandLine/vcftoFABIA
mv ./commandLine/vcftoFABIA ../inst/commandLine/
installing to /Library/Frameworks/R.framework/Versions/3.6/Resources/library/00LOCK-hapFabia/00new/hapFabia/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (hapFabia)