Michael Lawrence
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/ggbio |
| Branch: master |
| Last Commit: a36c7b4 |
| Last Changed Date: 2019-03-19 13:36:35 -0400 (Tue, 19 Mar 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 11:59:51 -0400 (Tue, 09 Apr 2019).
| Package 666/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ggbio 1.31.2 Michael Lawrence
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | ERROR | skipped | skipped | |||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK |
| Package: ggbio |
| Version: 1.31.2 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/ggbio_1.31.2.tar.gz && rm -rf ggbio.buildbin-libdir && mkdir ggbio.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ggbio.buildbin-libdir ggbio_1.31.2.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL ggbio_1.31.2.zip && rm ggbio_1.31.2.tar.gz ggbio_1.31.2.zip |
| StartedAt: 2019-04-08 20:25:36 -0400 (Mon, 08 Apr 2019) |
| EndedAt: 2019-04-08 20:27:17 -0400 (Mon, 08 Apr 2019) |
| EllapsedTime: 100.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/ggbio_1.31.2.tar.gz && rm -rf ggbio.buildbin-libdir && mkdir ggbio.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ggbio.buildbin-libdir ggbio_1.31.2.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL ggbio_1.31.2.zip && rm ggbio_1.31.2.tar.gz ggbio_1.31.2.zip
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install for i386
* installing *source* package 'ggbio' ...
** R
** inst
** byte-compile and prepare package for lazy loading
From .checkSubclasses(): subclass "GeneNameFilter" of class "AnnotationFilter" is not local and is not updated for new inheritance information currently;
[where=<environment: 0x04a84588>, where2=<environment: namespace:ggbio>]
From .checkSubclasses(): subclass "GeneNameFilter" of class "AnnotationFilter" is not local and is not updated for new inheritance information currently;
[where=<environment: 0x04a84588>, where2=<environment: namespace:ggbio>]
Creating a new generic function for 'rescale' in package 'ggbio'
Creating a new generic function for 'xlim' in package 'ggbio'
Creating a new generic function for 'geom_rect' in package 'ggbio'
Creating a new generic function for 'geom_segment' in package 'ggbio'
Creating a new generic function for 'geom_bar' in package 'ggbio'
Creating a new generic function for 'stat_identity' in package 'ggbio'
Creating a new generic function for 'stat_bin' in package 'ggbio'
** help
*** installing help indices
converting help for package 'ggbio'
finding HTML links ... done
Grob-class html
Plot-class html
Tracked-class html
arrangeGrobByParsingLegend html
autoplot-method html
finding level-2 HTML links ... done
geom_alignment-method html
geom_arch-method html
geom_arrow-method html
geom_arrowrect-method html
geom_bar-method html
geom_chevron-method html
geom_rect-method html
geom_segment-method html
ggbio-class html
ggplot-method html
ggsave html
layout_circle-method html
layout_karyogram-method html
nav html
plotFragLength html
plotGrandLinear html
plotRangesLinkedToData html
plotSingleChrom html
plotSpliceSum html
plotStackedOverview html
rescale-method html
scale_fill_fold_change html
scale_fill_giemsa html
scale_x_sequnit html
stat_aggregate-method html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpiWY9rV/R.INSTALL1038623a6d4d/ggbio/man/stat_aggregate-method.Rd:48: file link 'findOverlaps' in package 'IRanges' does not exist and so has been treated as a topic
stat_bin-method html
stat_coverage-method html
stat_gene-method html
stat_identity-method html
stat_mismatch-method html
stat_reduce-method html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpiWY9rV/R.INSTALL1038623a6d4d/ggbio/man/stat_reduce-method.Rd:45: file link 'reduce' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpiWY9rV/R.INSTALL1038623a6d4d/ggbio/man/stat_reduce-method.Rd:48: file link 'reduce' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpiWY9rV/R.INSTALL1038623a6d4d/ggbio/man/stat_reduce-method.Rd:51: file link 'reduce' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpiWY9rV/R.INSTALL1038623a6d4d/ggbio/man/stat_reduce-method.Rd:54: file link 'reduce' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpiWY9rV/R.INSTALL1038623a6d4d/ggbio/man/stat_reduce-method.Rd:64: file link 'reduce' in package 'IRanges' does not exist and so has been treated as a topic
stat_slice-method html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpiWY9rV/R.INSTALL1038623a6d4d/ggbio/man/stat_slice-method.Rd:66: file link 'slice' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpiWY9rV/R.INSTALL1038623a6d4d/ggbio/man/stat_slice-method.Rd:69: file link 'slice' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpiWY9rV/R.INSTALL1038623a6d4d/ggbio/man/stat_slice-method.Rd:72: file link 'slice' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpiWY9rV/R.INSTALL1038623a6d4d/ggbio/man/stat_slice-method.Rd:75: file link 'slice' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpiWY9rV/R.INSTALL1038623a6d4d/ggbio/man/stat_slice-method.Rd:78: file link 'slice' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpiWY9rV/R.INSTALL1038623a6d4d/ggbio/man/stat_slice-method.Rd:85: file link 'slice' in package 'IRanges' does not exist and so has been treated as a topic
stat_stepping-method html
stat_table-method html
theme html
tracks html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ggbio' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ggbio' as ggbio_1.31.2.zip
* DONE (ggbio)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'ggbio' successfully unpacked and MD5 sums checked