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BUILD BIN report for garfield on merida2

This page was generated on 2019-04-09 13:32:48 -0400 (Tue, 09 Apr 2019).

Package 596/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
garfield 1.11.0
Valentina Iotchkova
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/garfield
Branch: master
Last Commit: 585887a
Last Changed Date: 2018-10-30 11:54:35 -0400 (Tue, 30 Oct 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]

Summary

Package: garfield
Version: 1.11.0
Command: rm -rf garfield.buildbin-libdir && mkdir garfield.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh garfield_1.11.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R garfield.buildbin-libdir
StartedAt: 2019-04-09 05:22:43 -0400 (Tue, 09 Apr 2019)
EndedAt: 2019-04-09 05:24:09 -0400 (Tue, 09 Apr 2019)
EllapsedTime: 85.2 seconds
RetCode: 0
Status:  OK 
PackageFile: garfield_1.11.0.tgz
PackageFileSize: 386.8 KiB

Command output

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###
### Running command:
###
###   rm -rf garfield.buildbin-libdir && mkdir garfield.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh garfield_1.11.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R garfield.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=garfield.buildbin-libdir garfield_1.11.0.tar.gz'
>>>>>>> 

* installing *source* package ‘garfield’ ...
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c garfield_init.c -o garfield_init.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c garfield_perm.cpp -o garfield_perm.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c garfield_prep.cpp -o garfield_prep.o
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o garfield.so garfield_init.o garfield_perm.o garfield_prep.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.9-bioc/meat/garfield.buildbin-libdir/garfield/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (garfield)


>>>>>>> 
>>>>>>> FIXING LINKS FOR garfield.buildbin-libdir/garfield/libs//garfield.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "garfield.buildbin-libdir/garfield/libs//garfield.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "garfield.buildbin-libdir/garfield/libs//garfield.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "garfield.buildbin-libdir/garfield/libs//garfield.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "garfield.buildbin-libdir/garfield/libs//garfield.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "garfield.buildbin-libdir/garfield/libs//garfield.so"