Package: flowcatchR

Version: 1.17.0

Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:flowcatchR.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings flowcatchR_1.17.0.tar.gz

StartedAt: 2019-04-09 00:30:18 -0400 (Tue, 09 Apr 2019)

EndedAt: 2019-04-09 00:31:21 -0400 (Tue, 09 Apr 2019)

EllapsedTime: 63.9 seconds

RetCode: 0

Status:  OK

CheckDir: flowcatchR.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:flowcatchR.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings flowcatchR_1.17.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/flowcatchR.Rcheck’
* using R Under development (unstable) (2019-03-18 r76245)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flowcatchR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘flowcatchR’ version ‘1.17.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘flowcatchR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to ‘EBImage’ which was already attached by Depends.
  Please remove these calls from your code.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.9-bioc/meat/flowcatchR.Rcheck/00check.log’
for details.

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL flowcatchR
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘flowcatchR’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (flowcatchR)

name	user	system	elapsed
Frames	0.325	0.044	0.369
add.contours	0.000	0.001	0.002
channel.Frames	0.247	0.012	0.260
crop.Frames	0.243	0.016	0.259
export.Frames	0.000	0.002	0.001
export.particles	0.000	0.001	0.001
inspect.Frames	0.002	0.000	0.001
kinematics	0.362	0.000	0.362
length.Frames	0.114	0.016	0.131
link.particles	0.152	0.000	0.152
matchTrajToParticles	0.295	0.000	0.294
normalizeFrames	1.506	0.112	1.619
particles	0.002	0.000	0.002
penaltyFunctionGenerator	0	0	0
plot.TrajectorySet	0.264	0.000	0.264
plot2D.TrajectorySet	0.425	0.000	0.425
preprocess.Frames	0.758	0.036	0.797
read.Frames	0	0	0
read.particles	0.001	0.000	0.001
rotate.Frames	0.238	0.032	0.270
select.Frames	0.783	0.032	0.816
select.particles	0.017	0.000	0.018
shinyFlow	0	0	0
show-Frames-method	0.071	0.004	0.074
show-KinematicsFeatures-method	0.268	0.008	0.276
show-KinematicsFeaturesSet-method	0.217	0.000	0.217
show-LinkedParticleSet-method	0.236	0.000	0.240
show-ParticleSet-method	0.008	0.000	0.009
show-TrajectorySet-method	0.301	0.000	0.305
snap	0.000	0.000	0.001
trajectories	0.227	0.000	0.227