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INSTALL report for farms on tokay2

This page was generated on 2019-04-09 11:58:28 -0400 (Tue, 09 Apr 2019).

Package 527/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
farms 1.35.0
Djork-Arne Clevert
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/farms
Branch: master
Last Commit: de025b6
Last Changed Date: 2018-10-30 11:54:29 -0400 (Tue, 30 Oct 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: farms
Version: 1.35.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/farms_1.35.0.tar.gz && rm -rf farms.buildbin-libdir && mkdir farms.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=farms.buildbin-libdir farms_1.35.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL farms_1.35.0.zip && rm farms_1.35.0.tar.gz farms_1.35.0.zip
StartedAt: 2019-04-08 19:19:14 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 19:19:48 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 34.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/farms_1.35.0.tar.gz && rm -rf farms.buildbin-libdir && mkdir farms.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=farms.buildbin-libdir farms_1.35.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL farms_1.35.0.zip && rm farms_1.35.0.tar.gz farms_1.35.0.zip
###
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100 91347  100 91347    0     0  1391k      0 --:--:-- --:--:-- --:--:-- 1565k

install for i386

* installing *source* package 'farms' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'farms'
    finding HTML links ... done
    INI_Calls-class                         html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUZUZlR/R.INSTALL1ab86e271bf2/farms/man/INI_Calls-class.rd:6: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic
    INIcalls-methods                        html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUZUZlR/R.INSTALL1ab86e271bf2/farms/man/INIcalls-methods.rd:20: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUZUZlR/R.INSTALL1ab86e271bf2/farms/man/INIcalls-methods.rd:22: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUZUZlR/R.INSTALL1ab86e271bf2/farms/man/INIcalls-methods.rd:14: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic
    dummy                                   html  
    expFarms                                html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUZUZlR/R.INSTALL1ab86e271bf2/farms/man/expFarms.rd:5: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUZUZlR/R.INSTALL1ab86e271bf2/farms/man/expFarms.rd:35: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic
    generateExprVal.method.farms            html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUZUZlR/R.INSTALL1ab86e271bf2/farms/man/generateExprVal.method.farms.rd:39: file link 'li.wong' in package 'affy' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUZUZlR/R.INSTALL1ab86e271bf2/farms/man/generateExprVal.method.farms.rd:39: file link 'medianpolish' in package 'affy' does not exist and so has been treated as a topic
    getI_Eset-methods                       html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUZUZlR/R.INSTALL1ab86e271bf2/farms/man/getI_Eset-methods.rd:8: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUZUZlR/R.INSTALL1ab86e271bf2/farms/man/getI_Eset-methods.rd:18: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic
    getI_ProbeSets-methods                  html  
    getNI_Eset-methods                      html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUZUZlR/R.INSTALL1ab86e271bf2/farms/man/getNI_Eset-methods.rd:10: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUZUZlR/R.INSTALL1ab86e271bf2/farms/man/getNI_Eset-methods.rd:20: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic
    getNI_ProbeSets-methods                 html  
    lFarms                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUZUZlR/R.INSTALL1ab86e271bf2/farms/man/lFarms.rd:6: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUZUZlR/R.INSTALL1ab86e271bf2/farms/man/lFarms.rd:32: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic
    plot-methods                            html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUZUZlR/R.INSTALL1ab86e271bf2/farms/man/plot-methods.rd:20: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic
    qFarms                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUZUZlR/R.INSTALL1ab86e271bf2/farms/man/qFarms.rd:6: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUZUZlR/R.INSTALL1ab86e271bf2/farms/man/qFarms.rd:33: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic
    summary-methods                         html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUZUZlR/R.INSTALL1ab86e271bf2/farms/man/summary-methods.rd:19: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic
    testAffyBatch                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'farms' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'farms' as farms_1.35.0.zip
* DONE (farms)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'farms' successfully unpacked and MD5 sums checked