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INSTALL report for fCI on tokay2

This page was generated on 2019-04-09 12:24:27 -0400 (Tue, 09 Apr 2019).

Package 533/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
fCI 1.13.0
Shaojun Tang
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/fCI
Branch: master
Last Commit: dba9988
Last Changed Date: 2018-10-30 11:54:34 -0400 (Tue, 30 Oct 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK 

Summary

Package: fCI
Version: 1.13.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/fCI_1.13.0.tar.gz && rm -rf fCI.buildbin-libdir && mkdir fCI.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=fCI.buildbin-libdir fCI_1.13.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL fCI_1.13.0.zip && rm fCI_1.13.0.tar.gz fCI_1.13.0.zip
StartedAt: 2019-04-08 19:21:25 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 19:22:20 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 55.1 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/fCI_1.13.0.tar.gz && rm -rf fCI.buildbin-libdir && mkdir fCI.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=fCI.buildbin-libdir fCI_1.13.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL fCI_1.13.0.zip && rm fCI_1.13.0.tar.gz fCI_1.13.0.zip
###
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100  886k  100  886k    0     0  12.7M      0 --:--:-- --:--:-- --:--:-- 14.1M

install for i386

* installing *source* package 'fCI' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
in method for 'initialize' with signature '"NPCI"': no definition for class "NPCI"
in method for 'normalization' with signature '"NPCI"': no definition for class "NPCI"
in method for 'setfCI' with signature '"NPCI"': no definition for class "NPCI"
in method for 'populate' with signature '"NPCI"': no definition for class "NPCI"
in method for 'find.fci.targets' with signature '"NPCI"': no definition for class "NPCI"
in method for 'show.targets' with signature '"NPCI"': no definition for class "NPCI"
in method for 'call.npci' with signature '"NPCI"': no definition for class "NPCI"
in method for 'compute' with signature '"NPCI"': no definition for class "NPCI"
** help
*** installing help indices
  converting help for package 'fCI'
    finding HTML links ... done
    NPCI-class                              html  
    call.npci-methods                       html  
    call.npci                               html  
    compute-methods                         html  
    compute                                 html  
    deg.pairwise.fold.change                html  
    deg.up.down.info                        html  
    deseq.median.ratio.normalization        html  
    divergence.multivariate.distributions   html  
    fCI-class                               html  
    fCI.call.by.index                       html  
    fci.data                                html  
    figures-methods                         html  
    figures                                 html  
    find.fci.targets-methods                html  
    find.fci.targets                        html  
    find.mid.point                          html  
    get.fold.large.step                     html  
    get.npci.data                           html  
    get.npci.distance.matrix                html  
    get.outline.index                       html  
    get.protein.fold.step                   html  
    get.rank.combinations                   html  
    get.rna.fold.step                       html  
    initialize-methods                      html  
    intersect.of.lists                      html  
    is.installed                            html  
    multi.dimensional.fci.data              html  
    normalization-methods                   html  
    normalization                           html  
    npci.gene.by.pvalues                    html  
    npci.index.reconsidered                 html  
    npci.index.to.be.removed                html  
    npci.venn.diagram                       html  
    pairwise.change.occupancy               html  
    populate-methods                        html  
    populate                                html  
    report.target.summary                   html  
    setfCI-methods                          html  
    setfCI                                  html  
    show.targets-methods                    html  
    show.targets                            html  
    summarize-methods                       html  
    summarize                               html  
    total.library.size.normalization        html  
    trim.size.normalization                 html  
    two.sample.log.ratio                    html  
    two.sample.permutation.test             html  
    venndiagram-methods                     html  
    venndiagram                             html  
** building package indices
** installing vignettes
   'fCI.Rmd' 
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'fCI' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'fCI' as fCI_1.13.0.zip
* DONE (fCI)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'fCI' successfully unpacked and MD5 sums checked