Back to Multiple platform build/check report for BioC 3.9
ABC[D]EFGHIJKLMNOPQRSTUVWXYZ

INSTALL report for decontam on tokay2

This page was generated on 2019-04-09 12:38:09 -0400 (Tue, 09 Apr 2019).

Package 395/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
decontam 1.3.1
Benjamin Callahan
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/decontam
Branch: master
Last Commit: e772b2f
Last Changed Date: 2019-01-04 13:28:18 -0400 (Fri, 04 Jan 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: decontam
Version: 1.3.1
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/decontam_1.3.1.tar.gz && rm -rf decontam.buildbin-libdir && mkdir decontam.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=decontam.buildbin-libdir decontam_1.3.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL decontam_1.3.1.zip && rm decontam_1.3.1.tar.gz decontam_1.3.1.zip
StartedAt: 2019-04-08 18:53:22 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 18:54:10 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 48.9 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/decontam_1.3.1.tar.gz && rm -rf decontam.buildbin-libdir && mkdir decontam.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=decontam.buildbin-libdir decontam_1.3.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL decontam_1.3.1.zip && rm decontam_1.3.1.tar.gz decontam_1.3.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  770k  100  770k    0     0  10.8M      0 --:--:-- --:--:-- --:--:-- 12.1M

install for i386

* installing *source* package 'decontam' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'decontam'
    finding HTML links ... done
    isContaminant                           html  
    isNotContaminant                        html  
    plot_condition                          html  
    plot_frequency                          html  
    finding level-2 HTML links ... done

** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'decontam' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'decontam' as decontam_1.3.1.zip
* DONE (decontam)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'decontam' successfully unpacked and MD5 sums checked