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BUILD report for dagLogo on malbec2

This page was generated on 2019-04-09 11:36:28 -0400 (Tue, 09 Apr 2019).

Package 379/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
dagLogo 1.21.1
Jianhong Ou
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/dagLogo
Branch: master
Last Commit: b041652
Last Changed Date: 2019-01-08 13:14:26 -0400 (Tue, 08 Jan 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK [ ERROR ] skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 
merida2 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: dagLogo
Version: 1.21.1
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data dagLogo
StartedAt: 2019-04-08 20:06:21 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 20:09:21 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 179.6 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data dagLogo
###
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* checking for file ‘dagLogo/DESCRIPTION’ ... OK
* preparing ‘dagLogo’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘dagLogo.Rmd’ using rmarkdown
Loading required package: biomaRt
Loading required package: grImport
Loading required package: grid
Loading required package: XML
Loading required package: motifStack
Loading required package: grImport2

Attaching package: 'grImport2'

The following objects are masked from 'package:grImport':

    grid.picture, grid.symbols, grobify, pictureGrob, readPicture,
    symbolsGrob

Loading required package: MotIV
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match, mget, order,
    paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans,
    rowSums, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit, which, which.max, which.min


Attaching package: 'MotIV'

The following object is masked from 'package:stats':

    filter

Loading required package: ade4

Attaching package: 'ade4'

The following object is masked from 'package:BiocGenerics':

    score

Loading required package: Biostrings
Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following object is masked from 'package:base':

    expand.grid

Loading required package: IRanges
Loading required package: XVector

Attaching package: 'Biostrings'

The following object is masked from 'package:base':

    strsplit

Quitting from lines 186-187 (dagLogo.Rmd) 
Error: processing vignette 'dagLogo.Rmd' failed with diagnostics:
no slot of name "paths" for this object of class "Picture"
--- failed re-building ‘dagLogo.Rmd’

SUMMARY: processing the following file failed:
  ‘dagLogo.Rmd’

Error: Vignette re-building failed.
Execution halted