Back to Multiple platform build/check report for BioC 3.9
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

BUILD BIN report for copa on merida2

This page was generated on 2019-04-09 13:23:19 -0400 (Tue, 09 Apr 2019).

Package 337/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
copa 1.51.0
James W. MacDonald
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/copa
Branch: master
Last Commit: ca5a7e6
Last Changed Date: 2018-10-30 11:54:27 -0400 (Tue, 30 Oct 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]

Summary

Package: copa
Version: 1.51.0
Command: rm -rf copa.buildbin-libdir && mkdir copa.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh copa_1.51.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R copa.buildbin-libdir
StartedAt: 2019-04-09 05:03:38 -0400 (Tue, 09 Apr 2019)
EndedAt: 2019-04-09 05:04:49 -0400 (Tue, 09 Apr 2019)
EllapsedTime: 71.1 seconds
RetCode: 0
Status:  OK 
PackageFile: copa_1.51.0.tgz
PackageFileSize: 171.9 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf copa.buildbin-libdir && mkdir copa.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh copa_1.51.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R copa.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=copa.buildbin-libdir copa_1.51.0.tar.gz'
>>>>>>> 

* installing *source* package ‘copa’ ...
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c copa.c -o copa.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o copa.so copa.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.9-bioc/meat/copa.buildbin-libdir/copa/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (copa)


>>>>>>> 
>>>>>>> FIXING LINKS FOR copa.buildbin-libdir/copa/libs//copa.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "copa.buildbin-libdir/copa/libs//copa.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "copa.buildbin-libdir/copa/libs//copa.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "copa.buildbin-libdir/copa/libs//copa.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "copa.buildbin-libdir/copa/libs//copa.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "copa.buildbin-libdir/copa/libs//copa.so"