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INSTALL report for chipseq on tokay2

This page was generated on 2019-04-09 11:57:18 -0400 (Tue, 09 Apr 2019).

Package 258/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
chipseq 1.33.3
Bioconductor Package Maintainer
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/chipseq
Branch: master
Last Commit: a0bd51a
Last Changed Date: 2019-01-22 08:12:07 -0400 (Tue, 22 Jan 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK 

Summary

Package: chipseq
Version: 1.33.3
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/chipseq_1.33.3.tar.gz && rm -rf chipseq.buildbin-libdir && mkdir chipseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=chipseq.buildbin-libdir chipseq_1.33.3.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL chipseq_1.33.3.zip && rm chipseq_1.33.3.tar.gz chipseq_1.33.3.zip
StartedAt: 2019-04-08 20:21:38 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 20:22:50 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 72.7 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/chipseq_1.33.3.tar.gz && rm -rf chipseq.buildbin-libdir && mkdir chipseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=chipseq.buildbin-libdir chipseq_1.33.3.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL chipseq_1.33.3.zip && rm chipseq_1.33.3.tar.gz chipseq_1.33.3.zip
###
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100 1705k  100 1705k    0     0  19.2M      0 --:--:-- --:--:-- --:--:-- 20.8M

install for i386

* installing *source* package 'chipseq' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c rlesumprod.c -o rlesumprod.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o chipseq.dll tmp.def rlesumprod.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/chipseq.buildbin-libdir/00LOCK-chipseq/00new/chipseq/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'chipseq'
    finding HTML links ... done
    chipseqFilter                           html  
    coverageplot                            html  
    cstest                                  html  
    diffPeakSummary                         html  
    estimate.mean.fraglen                   html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8i8UYC/R.INSTALL224c2674583a/chipseq/man/estimate.mean.fraglen.Rd:48: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    islandDepthPlot                         html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8i8UYC/R.INSTALL224c2674583a/chipseq/man/islandDepthPlot.Rd:17: file link 'RleList-class' in package 'IRanges' does not exist and so has been treated as a topic
    laneSubsample                           html  
    peakCutoff                              html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8i8UYC/R.INSTALL224c2674583a/chipseq/man/peakCutoff.Rd:17: file link 'RleList-class' in package 'IRanges' does not exist and so has been treated as a topic
    peakSummary-methods                     html  
    subsetSummary                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'chipseq' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c rlesumprod.c -o rlesumprod.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o chipseq.dll tmp.def rlesumprod.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/chipseq.buildbin-libdir/chipseq/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'chipseq' as chipseq_1.33.3.zip
* DONE (chipseq)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'chipseq' successfully unpacked and MD5 sums checked