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BUILD report for YAPSA on celaya2

This page was generated on 2019-04-09 13:16:47 -0400 (Tue, 09 Apr 2019).

Package 1698/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
YAPSA 1.9.1
Daniel Huebschmann
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/YAPSA
Branch: master
Last Commit: 9bfe058
Last Changed Date: 2019-01-29 10:59:05 -0400 (Tue, 29 Jan 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK [ ERROR ] skipped  skipped 
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: YAPSA
Version: 1.9.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data YAPSA
StartedAt: 2019-04-08 22:07:45 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 22:11:37 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 232.1 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data YAPSA
###
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* checking for file ‘YAPSA/DESCRIPTION’ ... OK
* preparing ‘YAPSA’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘YAPSA.Rmd’ using rmarkdown
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match, mget, order,
    paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans,
    rowSums, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit, which, which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:base':

    expand.grid

Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: ggplot2
Registered S3 methods overwritten by 'ggplot2':
  method         from 
  [.quosures     rlang
  c.quosures     rlang
  print.quosures rlang
Loading required package: grid
Registered S3 method overwritten by 'GGally':
  method from   
  +.gg   ggplot2
Registered S3 methods overwritten by 'proxy':
  method               from    
  print.registry_field registry
  print.registry_entry registry
Warning in has_utility("convert", "ImageMagick") :
  ImageMagick not installed or not in PATH
Loading required package: BSgenome
Loading required package: Biostrings
Loading required package: XVector

Attaching package: 'Biostrings'

The following object is masked from 'package:base':

    strsplit

Loading required package: rtracklayer
Warning in posthoc.kruskal.nemenyi.test.default(x = sig_exposures_vector,  :
  Ties are present, p-values are not corrected.
Warning in posthoc.kruskal.nemenyi.test.default(x = sig_exposures_vector,  :
  Ties are present, p-values are not corrected.
Warning in posthoc.kruskal.nemenyi.test.default(x = sig_exposures_vector,  :
  Ties are present, p-values are not corrected.
Warning in posthoc.kruskal.nemenyi.test.default(x = sig_exposures_vector,  :
  Ties are present, p-values are not corrected.
Warning in posthoc.kruskal.nemenyi.test.default(x = sig_exposures_vector,  :
  Ties are present, p-values are not corrected.
Warning in posthoc.kruskal.nemenyi.test.default(x = sig_exposures_vector,  :
  Ties are present, p-values are not corrected.
Error parsing references: Could not read as Int: "August"
Error running filter /usr/local/bin/pandoc-citeproc:
Filter returned error status 1
Error: processing vignette 'YAPSA.Rmd' failed with diagnostics:
pandoc document conversion failed with error 83
--- failed re-building ‘YAPSA.Rmd’

SUMMARY: processing the following file failed:
  ‘YAPSA.Rmd’

Error: Vignette re-building failed.
Execution halted